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1Franck MICHEL, I3S
F. Michel 1, C. Callou 2, C. Faron-Zucker 1, O. Gargominy 3, C. Martin 2, J. Montagnat 1, S. Tercerie, M. Tounsi 1, F. Vest 3
1 Université Côte d’Azur, CNRS, I3S, France, 2 BBEES, Sorbonne Univ., MNHN, CNRS, 3 Service du Patrimoine Naturel, MNHN, CNRS
Référentiel taxonomique pour l’étude de l’histoire de la zoologie/biologie/archéozoologie
SemWeb.ProParis, 21/11/2016
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Introduction
The Hunting DogsMosaic, detail of a winged sea-griffin chasing a dolphin. Corinium Museum, CirencesterCredit: Carole Raddato - https://www.flickr.com/photos/carolemage/16295160644/
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Introduction
The Hunting Dogs Mosaic, detail of a winged sea-griffin chasing a dolphin
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Introduction
The Hunting Dogs Mosaic, detail of a winged sea-griffin chasing a dolphin
Modern zoological referenceCetacea, Delphinidae, Dehlphinus…
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Introduction
The Hunting Dogs Mosaic, detail of a winged sea-griffin chasing a dolphin
Archaeological excavationmentioning remains of dolphin
Modern zoological referenceCetacea, Delphinidae, Dehlphinus…
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Introduction
The Hunting Dogs Mosaic, detail of a winged sea-griffin chasing a dolphin
Archaeological excavationmentioning remains of dolphin
First Natural History Encycloedia, 1485.
Modern zoological referenceCetacea, Delphinidae, Dehlphinus…
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Introduction
The Hunting Dogs Mosaic, detail of a winged sea-griffin chasing a dolphin
Archaeological excavationmentioning remains of dolphin
First Natural History Encycloedia, 1485.
Modern zoological referenceCetacea, Delphinidae, Dehlphinus…
Need for common references:
taxonomic, geographical, cultural, chronological,
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First Natural History Encycloedia, 1485.
Introduction
Archaeological excavationmentioning remains of dolphin
Modern zoological referenceCetacea, Delphinidae, Dehlphinus…
TAXREF
The Hunting Dogs Mosaic, detail of a winged sea-griffin chasing a dolphin
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TAXREF
INPN web portal
Used by collectivities, biologists, architects, teachers, citizens…
Archaeozoological and Archaeobotanical Inventories of France3200+ references to excavations reports, studies, academic papers
4700 archaeological sites
2700 animal species, 1100 plant species
French TAXonomical REFerence for fauna, flora, fungus
509,000+ names including living/extinct/exotic species
Mainland France and overseas
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Enable use by Linked-Data Based Applications
http://inpn.mnhn.fr/taxref/label/60878
<a href= “...”>
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Enable use by Linked-Data Based Applications
http://inpn.mnhn.fr/taxref/label/60878
skos:closeMatch, skos:relatedMatch,owl:sameAs,rdfs:seeAlso, ...
<a href= “...”>
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From TAXREF to the Web of Data
Transition from...
...to a thesaurus exploitableusing SW technologies
SKOS: Simple Knowledge Organization SystemW3C RDF-based standard to represent controlled vocabularies: glossary, taxonomy, thesaurus...
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TAXREF SKOS Modelling
Taxonskos:Concept
Reference nameskosxl:Label
Synonymskosxl:Label
skosxl:prefLabel
Habitatskos:Concept
taxprop:habitat
Biogeo. statusskos:Concept
Taxonomical Rankskos:Concept
"Linnaeus, 1758”
nt:has_rank
“Delphinus delphis”
skos:broader
txn:authority
“Van Bree, 1971”
“Delphinus tropicalis”
http://inpn.mnhn.fr/taxref/label/60881
txn:authority
skosxl:literalForm
"Short-beakedcommon dolphin"@en
taxprop:vernacularName
skosxl:literalForm
http://inpn.mnhn.fr/taxref/label/60878
taxprop:bioGeoStatusIn
skosxl:altLabel
http://inpn.mnhn.fr/taxref/9.0/taxon/60878
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Taxon => SKOS ConceptNames => SKOS LabelsVernacular namesTaxonomical RankHabitatBiogeographical status
From TAXREF to the Web of Data
SKOS Model
TAXREF-SKOS
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Taxon => SKOS ConceptNames => SKOS LabelsVernacular namesTaxonomical RankHabitatBiogeographical status
From TAXREF to the Web of Data
SKOS Model
TAXREF-SKOS
Taxonomical ranks, habitats, geographical locations…
Geonames
TaxonConcept Ontology: habitat/authority, tax. ranks
NCBI Organismal Classification: has_rank, tax. ranks
GeoSpecies Knowledge Base: tax. ranks
ENVO Environment Ontology: habitats
Darwin Core Terms: occurenceStatus, locationID
…
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From TAXREF to the Web of Data
SKOS Model
TAXREF-SKOS
Automatic discovery of links with well-adopted open data sets
AGROVOC
Vertebrate Tax. Ontology
NCBI Organismal Classification
Taxon => SKOS ConceptNames => SKOS LabelsVernacular namesTaxonomical RankHabitatBiogeographical status
ER issues: spelling, disagreements,RDFS vs. SKOS
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Towards sustainable, dereferencable URIs
http://inpn.mnhn.fr/taxref/label/60878
skos:closeMatch, skos:relatedMatch,owl:sameAs,rdfs:seeAlso, ...
SPARQL
Corese-KGRAM
Triple StoreSPARQL 1.1 EndpointSPARQL TemplatesLinked Data Platform
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Perspectives and on-going works
Extend TAXREF
• Cultural, chronological and philological information
• Geographical scope: Mediterranean areas
• Red list: vulnerable/endangered species
• …
TAXREF-SKOS is just an enabler to...
• Expose (existing) TAXREF-based datasets as Linked Data
• Develop/extend TAXREF-based applications to enable searching through the Linked Open Data
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Thank you
