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Page 1: COMMITTEE - repository civitas UGM · 1st International Conference on Tropical Agriculture (ICTA) 2016 Purification and Characterization of Alkaline Protease Enzyme from Bacillus
Page 2: COMMITTEE - repository civitas UGM · 1st International Conference on Tropical Agriculture (ICTA) 2016 Purification and Characterization of Alkaline Protease Enzyme from Bacillus
Page 3: COMMITTEE - repository civitas UGM · 1st International Conference on Tropical Agriculture (ICTA) 2016 Purification and Characterization of Alkaline Protease Enzyme from Bacillus

COMMITTEE

STEERING COMMITTEE1. Dr. Satyawan Pudyatmoko, S.Hut., M.Agr.5c.2. Dr. Jamhari, S.P.,M.P.3. Prof. Dr. Ir. Ali Agus, DAA., DEA4. Dr. drh. Joko Prastowo, M.5i.

5. Prof. Dr. Ir. Lilik Sutiarso, M.Eng.6. Prof. Dr.lr. Budi Prasetyo Widyobroto, DEA.,DESS.7. Dr.Budiadi, M.Agr.8. Prof. Dr. Tata Wijayanta, M.Hum .

ORGANIZING COMMITTEE1. Yuny Erwanto, Ph.D.

2. Dr. Hatma Suryatmojo3. Anggoro Cahyo Sukartiko, Ph.D.4. Atus Syahbudin, Ph.D.5. R.Ahmad Romadhoni Surya Putra, Ph.D.6. Dr. Alim Isnansetyo7. Dr. Ngadisih8. Raden Rara Devita Anggraeni, Ph.D.9. Galuh Ratnawulan Sekararum, S.E.1O.Dino Dwi Jayanto, S.Kom.11.AlifYuni Alfiani, S.Kom

12.Sri Wijayanti Suryaningrum, S.Pd.13.Nadhia Nuri Tariana14.Ayu Dipta Kirana15.Aristia Pintakarini

324------------ The 1" UGM International Conference on Tropical Agriculture 2016

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Table of ContentsWELCOME FROM ICTA BOARD •....•.......••...........•.......•....•...•......•......•..•................•.. •..·3WELCOMING SPEECH FROM RECTOR··· ••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••·······5SCHEDULE •••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••··7INVITED SPEAKER ..•....•....•....•.........•...•....•.....................•.... ··..•·..·.. ·.. ····•..•.. · •·..•· ·'0

a. Prof. Dr.rer.nat. Heinz Dieter Isengard 11b. Prof. Mamoru Kanzaki 13c. Dr. Mulyoto Pangestu · · · 15d. Prof. Dr.lr. Mohammad Na'iem M. Agr.5c ·..· · · · ·.. 18e. Prof. Stefaan De Neve · · · 20f. Suadi, S.Pi.,M.Agr.5c., Ph.D · · ·..·..· · 22

LIST PARTICIPANTS ••........•....•..........•....•...................•............ •·..···•··..··..·..•··..··.. ·•····..··24PARALLEL SESSIONS .........•..............•..........•..................•......... ··•·..•·..•·..•··..·..•···..•·····.. 53

ABSTRACTS OF SUSTAINABLE TROPICAL FISHERY ••••••••••••••••••••••••••••••••••••••••••••••••••••66A.11.1SOUTH SEA PEARL SHELL QUALITY INSPECTION USING X-RAY DIGITAL RADIOGRAPHy •.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.69A.11.2CULTIVATION AND CONSERVATION OF INDONESIAN NATIVE FISH (Rasbora lateristriata) THROUGH

FISH FARMER GROUP EMPOWERMENT IN YOGYAKARTA •.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.·70A.l1.3 DEVELOPMENT FISHERIES INDUSTRY; ALTERNATIVE FISH FEED INDUSTRY CASE STUDy •.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.•.71A.11.4NON-SPESIC DEFENCE POTENTIATING ACTIVITY OF ALGINAT FROM SARGASSUM SP.lN

WALKING CATISH (Clarias Sp.) •.•.•.•.•.•.·•.•.•.·•.•.•.·•.•.•.•.•.•.·•.•.•.•.•.•.·•.•.•.•.•.•.•.•.•.··•.•.•.·•.•.•.•.•.•.•.•.•.·•.•.·•.•.·•.•.·•.•.•.•.•.·•.··•.·····•.··············•.···72A.1I1.1AN APPLICATION OF DATA ENVELOPMENT ANALYSIS TO DETERMINE THE EFFICIENCY LEVEL OF

THE FISH AUCTION FACILITY IN COASTAL AREA, JAVA ISLAND···································································•.····•.•.·····•.······•.·73A.1I1.2MOLECULAR IDENTIFICATION OF CHITINOL YTIC BACTERIA ISOLATED FROM SHRIMP PASTE AND

CHARACTERIZATION OF ITS CHITINASE GENES ····•.······•.•.··•.•.•.•.•.·•.·•.•.•.•.·•.•.··•.•.···•.•.·····•.·•.·74A.I.1INTRA-SPECIFIC VARIATION OF THE MITOCHONDRIAL 16S GENE AMONG PERIOPHTHALMUS KALOLO

LESSON 1831 (PISCES: GOBIIDAE) FROM BOGOWONTO ESTUARY, YOGYAKARTA, INDONESiA •.•.··•.•.•.•.•.·•.•.·•.•.•.·•.· 75A.1.2 A SIMPLE OPTIMISED DNA EXTRACTION METHOD FOR MACROALGAE FROM COASTS OF GUNUNGKIDUL,

YOGYAKARTA, USING CTAB-BASED METHOD·················································...............•........•............•.•..•.•..•.•.•.•.•..•.•..•.•...•.•....•.76A.l.3 SASI:TRADITIONAL CONSERVATION TO PROTECT POPULATION OF MANGROVE CRABS

(SCYLLA SERRATA FORSKAL 1775) IN MANGROVE AREA OF LEKSULA VILLAGE OF BURU SELATAN DiSTRICT· •.· 77A.1.4INDONESIAN SUSTAINABLE FISHERIES MANAGEMENT IN GLOBALIZATIONAND REGIONALIZATION OF ASEAN

ECONOMIC COMMUNITY (AEC) 2016·················································· ·····························•.····•.··78

ABSTRACTS OF SUSTAINABLE ANIMAL HEALTH •..............•••...............•.....•............••. 79B.I.1 DIFFERENCES IN THE REARING SYSTEM TO BALI CADLE GASTROINTESTINAL HELMINTHS INFESTATION

IN PRAFI DISTRICT MANOKWARI REGENCY WEST PAPUA PROVINCE ·····························•.·80B.1.2TRYPANOSOMIASIS AND SURRA: VECTOR, DETECTION AND ERADICATION TO ENSURE LIVESTOCK

PRODUCTION IN INDONESiA···· •.····•.······················•.····•.·•.··•.·•.....•......•.........•.........................................................................................81B.I.3 DETECTION THE PRESENCE OF BOVINE VIRAL DIARRHEA VIRUS PERSISTENT INFECTION IN LOW REPRODUCTIVE

PERFORMANCE DAIRY CADLE HERD IN CENTRAL JAVA, INDONESiA································································•.··•.•.•.•.··•.·•.··82B.l1.1FASCIOLOSIS IN CENTRAL JAVA: A CONTINUOUS THREAT ....................•.........•.........................················································83B.II.2DETECTION OF TREMBOLONE ACETATE IN BEEF MUSCLE AND LIVER USING HIGH PERFORMANCE LIQUID

CHROMATOGRAPHY METHOD ..............................................................•.....•.........................................·················································84B.l1.3 ANTIBIOTIC RESISTANCE IN ESCHERICHIA COLI ISOLATED FROM BROILER ASSOCIATED WITH

ENROFLOXACINE AND OXYTETRACYCLINE TREATMENT ........•...•........•..•.•............•....................·················································85B.l1.4SEROLOGICAL AND MOLECULAR BIOLOGICAL DIAGNOSIS FOR LEPTOSPiROSiS··········································•.•.·····•.·•.··•.·86B.l1.5RAPID DETECTION OF Verocytotoxigenic Escherichia coli (VTEC) BACTERIA BY POLYMERASE

CHAIN REACTION (PCR) METHOD AGAINST ISOLATES INOCULATED IN BGLB·····································································87B.II.6 INVESTIGATION OF LEAD CONTAMINATION IN BADUNG RIVER USING FISHES AS BIOINDICA TORS ...•..................... 888.11.7HAEMOPROTOZOA INFECTIONS OF DOMESTIC BIRDS IN HILLY AREAS OF BANGLADESH ·························•.·············•.89

ABSTRACT OF SUSTAINABLE TROPICAL FORESTRy · 90cnu ASSESSMENT OF LANDSLIDE RISK AND DISASTER MANAGEMENT IN WATUGEDE CATCHMENT,

GUNUNGKIDUL DISTRICT .........................................................................•....................•............•.•.•.··•.····•.•.·•.•.·•.•.·•.·•.·•.·•.·•.···················91

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F.V13 ESTABLISHING QUAIL POPULATIONS FOR LESS BIASED EXPERIMENTAL RESULTS 239F.V1.4RESTRlalON ENZYME MAPPING OF CYTOCHROME B GENE ON ANGUS GRADE CATTLE AND OTHER CATTLE

IN THE WORLD ..· ·..· · · · · · · ·· · · 240F.VI,5COMPARATIVE STUDY OF BODY MEASUREMENTS IN DIFFERENT STRAIN OF INDONESIAN LOCAL DUCKS · 241F.VI,6THEEFFECT OF BIRTH TYPE ON PHENOTYPIC PERFORMANCE OF SAPUDI SHEEP IN SAPUDIISLAND, MADURA 242F.VI.7THE MICRORNA-AMPK GENE CANDIDATE IN REGULATE LIPID ACCUMULATION OF BOVINE GRANULOSA CELL

LEUTEINIZATION: AN INSILICO STUDy ·· ·· · ·· · · · ··· ·· ·..............................•.................................. 243F.VI,8IMPACT OF BULL'S BREED AT CONCENTRATION OF PROSTAGLANDIN COLLECTED FROM VESICULAR

SEMINALIS BY IN VITRO METHOD ·· ··..··· ·· ··· ·· ·· ··· ·· 244F.VI.9 ANIMAL WELFARE AS STRESS MANAGEMENTTO IMPROVE BEEF CATTLE REPRODUCTION · 245F.V1.10SPERM QUALITY OF BALI CATTLE AFTER GIVEN CRUDE TANIN SUPPLEMENT IN THE SEMEN 246F.VI.11 BLOOD CHEMISTRY PARAMETERS OF ADULT KACANG GOATS 247F.VI.12 THE MOTILITY OF DEG RAM'S SPERMATOZOA BEFORE AND AFTER FREEZING WITH ADDITION

ANTIOXIDANT AND DIFFERENT EXTENDER · ··248F.IV.1 POTENTIAL OF MARMELOSIN BIOACTIVE COMPOUND IN AEGLE MARMELOS TO INHIBIT THE GROWTH OF

BACTERIAL UREASE FOR REDUCE FORMING AMMONIA (NH3) IN EXCRETA 249F.IV.2THE ADDITION EFFECT OF FERMENTED AEGLE MARMELOS FRUIT AND BAMBOO SHOOTS IN

CAmE FECES SLURRY TO THE REDUCTION OF AMMONIA GAS EMISSION 2S0F.IV.3 MEAT CONTAMINATION FROM FARM TO FORK THREATEN HUMAN HEALTH 251F.lV.4 EFFECTSOF ADMINISTRATION OF COMBINATION OF PALM KERNEL MEAL, KATUK LEAF AND BETEL NUT

POWDER ON SENSORY VALUE OF MEAT IN THE GOAT ·252F.lV.s QUANTITATIVE ELEMENTAL ANALYSIS OF VARIOUS POULTRY EGGSHELL CUTICLE USING SCANNING ELECTRON

MiCROSCOPE 2S3F.lV.6 PHYSICAL QUALITY OF EGG OF LAYING HENS FED DIETS CONTAINING PURSLANE (Portulaca oleracea)

RICH IN ALPHA-LINOLENIC ACID ··· ··· ···· ·· · · ··· ···254F.1I1.1HETEROTROPHIC AND AEROBIC AMMONIUM REMOVAL IN WASTEWATER BY Alcaligenes sp. LS2T 2S5F.l11,2MANAGEMENT AND REPRODUCTIVE PERFORMANCES OF ACEH COWS, LOCAL INDONESIAN CATTLE KEPT BY

FARMERS IN A TRADITIONAL SySTEM ··· · · · · · ··· 2S6F.1I1,3ARTIFICIALINSEMINATION ON THE ETAWAH GRADE DOES USING FROZEN SEMENS OF GEMBRONG GOAT 257F.III.4 EDIBLE PORTION OF CARCASS AND OFFALS OF INDONESIAN YEARLING KACANG BUCK FED RUMINALLY

UNDEGRADABLE PROTEIN 258F.lll.s POSTPARTUM ESTRUS VARIATION OF LOCAL COWS AT VILLAGE BREEDING CENTER IN

THE YOGYAKARTA PROVINCE · ·· ·259F.l11.6ANIMAL WELFARE ASSESSMENT SYSTEM FOR SUSTAINABLE CATTLE PRODUCTION IN INDONESIA 260F.lII.7 REPRODUCTIVE PERFORMANCE OF JABRES COW AT KETANGGUNAN DISTRICT, BREBES REGENCY,

CENTRAL JAVA PROVINCE, INDONESIA 261F.V.1 BEEFCATTLE FARMERS ATTITUDE TOWARDS ENVIRONMENTAL AND SOCIOECONOMIC DEVELOPMENT IN

YOGYAKARTA PROVINCE · · · ·· ·· ·· · ·· · ·262F.V.2 MARKET SEGMENTATION OF GOAT MILK CONSUMERS: AN APPROACH USING DEMOGRAPHIC AND

BEHAVIORAL VARIABLES ..·..·· ·· · • ·..•..·· ·· · · ·· 263F.V.3 ANALYSIS OF THE IMPLEMENTATION OF ETTAWA CROSSBRED GOAT MANURE TREATMENT IN THE DISTRICT

KULONPROGO YOGYAKARTA INDONESIA · ···· · · ··· · ··..·264F.V.4 ROLE OF FEMALE MEMBERS IN SMALLHOLDER FARMERS' FAMILY FOR GOAT FARMING ACTIVITIES IN

THE VILLAGE AT THE UPLAND AREA, YOGYAKARTA INDONESIA 265F.V.s DEVELOPMENT OF MICRO FINANCE INSTITUTIONS MODEL FOR FARMERS GROUP TO SUPPORT BEEF CATTLE

FARMING SUSTAINABILITY: A PILOT STUDY 266F.V.6 THE PERFORMANCE OF MILK PRODUCTION, TOTAL MILK REVENUE AND REPRODUCTION INDICATORS ON

DAIRY SMALLHOLDERS IN DAERAH ISTIMEWA YOGYAKARTA AND EAST JAVA PROVINCE, INDONESIA· ·..· 267F.V.7 PERCEPTION OF BEEF CATTLE FARMERS TOWARD CROP WASTE AS ANIMAL FEED 268F.v.8 USING CAUSAL LOOP DIAGRAM AS A QUALITATIVE INSTRUMENT TO MODEL SMALLHOLDERS: A CASE STUDY OF

GOAT FARMING IN GUMELAR - BANYUMAS ..·· · · ·· · ·· ·• · ·..· · · · ·..·269F.V.9 THE RATE OF TECHNOLOGY ADOPTION ON INTEGRATED PALM OIL AND CATTLE FARMING IN

JAMBI PROViNCE ..· ·..·..· · ·..· ·..·..· · ·.....................................................•............................................. · ·..·273F.V.10 SUMMARy ·..· · · ·..· ·..·..·..·..··..·..· · ·· ·..·..··..·..··..·274

LIST OF POSTER SESSIONS .••.••.••..•..••.•••••••..•.•.•..••••••.•••••••••••••••••••••.••••••••••••••••• ••·•••••····276ABSTRACTS OF POSTER SESSiONS· •••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••••···••••·•·••284

1. IDENTIFICATION OF POTENTIAL FISHERY COMMODITY FOR SUPPORTING SMES OF PROCESSED FISHERYPRODUCT OF WEST KALIMANTAN, INDONESIA (A CASE STUDY IN SAMBAS REGENCy) · · · 285

2. INTESTINAL NEUROTROPISM OF NEWCASTLE DISEASE VIRUS FIELD ISOLATES IN LAYER CHICKEN · ·2863. HOST PLANTS OF WEAVER ANT (OECOPHYLLA SMARAGDINA) IN GREEN AREA OF

UNIVERSITAS GADJAH MADA CAMPUS· · · · · · · · ·..· · ·..· · · · · ·..·2874. ETlHNOBOTANICAL STUDY OF SACRED FOREST OF BULUPITU, KEBUMEN, CENTRAL JAVA 288

The'· UGM International Conference on Tropical Agriculture 2016

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Page 9: COMMITTEE - repository civitas UGM · 1st International Conference on Tropical Agriculture (ICTA) 2016 Purification and Characterization of Alkaline Protease Enzyme from Bacillus

1st International Conference on Tropical Agriculture (ICTA) 2016

Purification and Characterization of Alkaline Protease Enzyme from Bacillus cereus LS2B

Yendri Junaidia, Ambar Partiwiningruma, Lies Mira Yusiatia, Jamharia, Nanung Agus Fitriyantoa*

aFaculty of Animal Science, Universitas Gadjah Mada, Bulaksumur, Yogyakarta 55281, Indonesia.

Abstract

Alkaline protease enzyme from Bacillus cereus LS2B was successively purified by three steps procedure including ammonium precipitation, membrane dialysis, and HiTrap ion exchange chromatography with DEAE Sepharose FF matrix. The best enzyme concentration was obtained by precipitation using 80% of ammonium sulfate concentration. Observing the various levels of the enzyme concentration was significantly (p> 0.05) increased the activity of the enzyme, whereas the highest activity was found in the enzyme with 100% of protein concentration (without dilution). The collection of tyrosine, through the technique of centrifugation and filtration techniques, was not significant effect on the enzyme activity. Characteristics of the HiTrap ion exchange chromatography machine was set at flow rate 1.5 ml min-1. The specific activity of the crude enzyme, ammonium sulfate, membrane dialysis and HiTrap ion exchange were observed 0.4 U/mg, 0.5 U/ml, 1, 8 U/mg and 7.2 U mg, respectively. At the step of purification using HiTrap ion exchange chromatography, the alkaline protease enzyme has increased the degree of purity 16 fold from the crude enzyme. Furthermore, the protein yield was decreased from 100% from crude enzyme to 2% by HiTrap ion exchange purification. The purified enzyme was characterized using SDS-PAGE resulted in three bands of protein molecules which correspond to 34 kDa, 17 kDa, and 13 kDa molecular weight. Keywords: Alkaline protease enzyme, protein, Bacillus cereus LS2B, Purification, Characterization

Introduction

Alkaline protease is the type of enzyme which has a significant role in the development of various industries such as food, feed, detergents, silk, pharmaceutical, and most of the dominant were use in the leather tanning industry and diagnosis (Mothe and Sultanpuram, 2016) [1]. Tanning industry needs protease enzyme to improve the production efficiency and to create environmentally friendly industrial processes (Singh et al., 2004) [2]. Protease enzyme used in the process of de-hairing can eliminate parts of the skin which function is to hold hair stuck on the skin therefore that hair can be removed without damaging leather. This is different from the process of de-hairing by using chemicals that may cause the disulfide bonds in keratin cysteine residue severed causing excessive destruction and melting of fur, so hair can’t be uprooted completely (Sundararajan et al., 2011) [3].

Molecules of protein enzyme are very complex. Thus, it is capable of breaking the peptide bonds of proteins changed into amino acids. Alkaline protease enzyme produced from a variety of sources such as bacteria, fungi, mold, sewage, blood and tissues of mammals. The enzyme is able to catalyze thousand times higher product, able to work on broad spectrum pH and low temperature, specific and selective towards a particular substrate. In recent years, commercial production of alkaline protease enzyme is focused on bacterial metabolism. Singh et

al., (2004) [2] mention that alkaline protease produced by Bacillus sp. is one of the best commercial enzymes products that exist in the market. Each alkaline protease enzyme produced must have a high catalytic ability (Pena-Montes et al., 2008) [4]. So that the analysis of the degree of purity and characterization of enzymes becomes necessary to support the ability of the catalysis enzyme, so it can be maximum applied. This research was performed to purified the alkaline protease produced by Bacillus cereus LS2B which previously isolated from soil at the odorous region at the tropical area.

Materials and Methods

Culture condition and enzyme production

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Enzyme production were performed using a modified method from Moradian (2009) [5]. The preliminary procedure was started by making the stock solution medium using 1 g of meat extract, 1 g of microbiological peptone, and 0.5 g NaCl with 70 ml of distilled water into a beaker glass, continued by stirring into homogenous. The medium is then set to pH 7.2 followed by adjusted with distilled water to a volume of 100 ml. Solid agar medium is made from 1 ml of stock solution, 1.5 g agar, and 99 ml of distilled water in 250 ml Erlenmeyer. Agar medium is heated with a hot plate stirrer, and then wait until quite cold and poured in a petri dish. Furthermore, when agar medium has hardened, by using ose, bacteria were streak and incubated for 24 hours. Once bacteria have grown, it stored in a refrigerator at 4°C. Liquid medium was made with a mixture of 90 ml of distilled water and 10 ml of stock solution continued by sterilization by autoclaving at 121°C for 15 minutes, then cooled in the Laminar Air Flow (LAF). One ose pure isolate was grown on agar or cultivated by putting into 5 ml stock liquid medium and incubated on a shaker for 24 hours. The growth of bacteria was confirmed by observing the turbidity of the medium.

To produce an alkaline protease enzyme, 3 ml of overnight-grown pre-culture bacteria were grown in liquid medium having 100 ml of stock solution and 3 ml of skim milk. The pH of the medium was same as the pH of stock solution. The inoculated medium was then incubated for 24 h at 30°C and 120 rpm in an orbital shaker. The crude enzyme was separated from bacterial cell by centrifugation at speed 3500 rpm for 15 min at 4°C and continued by stored in refrigerator temperature 4°C for further observation. Enzyme precipitation by (NH4)2SO4

To observe which concentration was appropriate to precipitate the enzyme, this several (NH4)2SO4

concentration was made: 50% (29.1 g (NH4)2SO4/100 ml crude enzyme), 60% (36.1 g (NH4)2SO4/100 ml crude enzyme), 70% (47.6 g (NH4)2SO4/100 ml crude enzyme) and 80% (51.6 g (NH4)2SO4/100 ml crude enzyme) (Mothe and Sultanpuram, 2016 [1]; Asker et al., 2013) [6]. After weighing all the (NH4)2SO4, it was continued by mixing (NH4)2SO4 into the enzyme slowly and stirred for overnight at 4°C until homogeneous. Then the enzyme solution was centrifuged at speed 3500 rpm at 4°C for 30 min. The pellet and supernatant were separated in a conical tube and different activity levels were measured using methods Bergmeyer and Grassl 1983. Determination of the best enzyme concentrations

Determination of the enzymes concentration in measuring activity is very important to establish the

efficiency of the enzymes uses. The activity was measured with various enzyme concentrations: 25%, 50%, 75% and 100%. With reference to the highest activity achieved using methods Bergmeyer and Grassel 1983 as modified on the decision-tyrosine (catalysis enzyme results against the substrate) in a manner filtered and centrifuged. The step of research was begins by making several steps dilution of enzyme concentration to 25%, 50%, 75% and 100% which made duplo. A number of 1 ml enzymes that has been concentrated, was mixed with 3 ml casein 1.5%, 0.5 ml phosphate buffer pH 7, and then incubated at 37°C for 10 min for every samples. For the blank solution, the enzyme was added after incubation at 37°C for 10 minutes. A number of 3 ml Trichloroacetic Acid (TCA) 5% was added and incubated at room temperature for 10 minutes. Each enzyme with concentration (25%, 50%, 75% and 100%), which is reacted, 4 tubes filtered with Whatman No.1 and four other tubes were centrifuged. A number of 0.75 ml of filtrate taken from each concentration, added 2.5 ml Na2CO3 (0.5 M) and added 0.5 ml of Folin reagent while vortexes and incubated for 15 minutes. The next step of the supernatant was measured the absorbance of each solution with the spectrophotometer at λ = 578 nm and

then calculating the level of activity. Preparation of HiTrap ion exchange chromatography column

Hitrap ion exchange chromatography was used to purify the akaline protease from the strain. The first step was performed by filling sepharose FF DEAE matrix into HiTrap ion exchange column (column length 14.5 cm and diameter 1.5 cm). Furthermore, column had been equilibrated with 0.05 M phosphate buffer pH 8 for one night. After the equilibration, Phosphate Buffer Saline (PBS) (KH2PO4 0.1 N and 0.2 N NaOH) pH 8 was flowed for 4 times of the column volume with fixed flow rate system. Enzyme sample was then flowed for one volume column. After all the enzyme sample was accommodated inside the column, it was followed by flowing the elution buffer that is composed of a mixture of PBS pH 8 (KH2PO4 0.1 N and 0.2 N NaOH) and 0.5 N NaCl, with the amount of 4 times of column volume. Each elution which came out after the elution buffer flowed from the tube was calculated the activity to know the position of alkaline protease. The highest activity found from the elution time was indicated as the position of Alkaline protease enzyme.

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Purifications of alkaline protease enzyme

Step 1. Precipitation by ammonium sulfate

Crude enzymes (free cell extract) that have been collected and separated from bacteria cell via

centrifugation, was subjected to the purification processes. The first step was ammonium sulphate precipitation. Based on the previous method determined, the best ammonium sulphate concentration to precipitate alkaline protease enzyme of Bacillus cereus LS2B was 80%. Crude enzyme was prepared and then mixed with ammonium sulphate to 80% gradually over the stirrer at 4°C for overnight. To isolate the enzyme protein that has been reacted with ammonium sulphate, enzymes was centrifuged at 3500 rpm for 30 min at 4°C, to precipitate an enzyme component from the supernatant. The pellet was assumed as protein enzyme which precipitated by ammonium sulfate. To eliminate the ammonium sulphate from the pellet component, enzyme protein was then subjected to membrane dialysis. Step 2. Purifications by membrane dialysis

Membrane dialysis was performed to separate the salt content of the protein solution based on the

character of the semipermeable (Sattyasai, 2012) [7]. Dialysis buffer was made in pH 8 with a mixture of 0.58 g NaCl, 1.38 g NaH2PO4 and 1.78 g Na2HPO4 in 1000 ml distilled water. Enzyme sample was then inserted into a cellophane bag of dialysis membrane, and diluted with dialysis buffer pH 8 by 10 time’s dilution (enzyme 1: 9 buffer). Dialysis process began by including cellophane dialysis bag containing enzyme and buffer into 1000 ml of buffer solution at temperature of 4°C while using a stirrer rotated at low speed. In every 4 hours the sac membrane buffer solution replaced with a total of 3 times volume (Li’s et al., 2016 [8]; Asker’s et. al 2013) [6]. Step 3. Purifications by HiTrap ion exchange chromatography

After completion of membrane dialysis, enzyme was subjected to HiTrap ion exchange

chromatography with DEAE matrix filled by sepharose FF column (column size 14.5 cm x 1.5 cm). Before the enzyme flowed pass the columns, column was equilibrated by flowing with Phosphate Buffer Saline (PBS) pH 8 from a mixture of (0.1 N KH2PO4 and 0.2 N NaOH) at 4 times of column volume with flow rate 1.5 ml min-1. Then after equilibration buffer finished, column was subjected by enzyme at one of column volume. After all the samples accommodated in the column, it was followed by flowing elution buffer that is composed of a mixture of PBS pH 8 (0.1 N KH2PO4 and 0.2 N NaOH) with 0.5 N NaCl at amount 4 times of the column volume. Each elution which came out after the elution buffer flowed was accommodated in Eppendorf tubes and labelled for each elution. From the process of elution, it was obtained a number of 52.5 ml per once running accommodated in 35 tube volume 1.5 ml. Sample elution at 30 and 38 minutes were taken to measure the absorbance and calculate the level of activity, with the sample on the step of purification using ammonium sulfate and dialysis.

Activity analytic of the enzyme purification step result

Measurement of the enzyme activity is done in three steps, including measurement of blank, tyrosine standard and sample (Bergmeyer and Grassl 1983) [9]. Blank measurement was performed by mixing 0.5 ml of buffer at pH 7 to pH 12, plus 0.5 ml of casein and 1 ml of sterile distilled water in a test tube. Moreover, Incubation at 37°C for 10 minutes, then it was added with 1 ml TCA 10%, and incubated again for 10 min at room temperature and then centrifuged for 15 min. The supernatant was taken as much as 0.75 ml, 2.5 ml was added Na2CO3 (0.5M), 0.5 ml folin reagent and allowed to stand for 15 minutes at room temperature, and then measured the absorbance at wavelength 578 nm. Tyrosine standard measurement was carried out by mixing 0.5 ml of buffer pH 7 to pH 12, plus 0.5 ml and 1 ml tyrosine casein included in the reaction tube. Incubation at 37°C for 10 minutes, then add TCA 10% of 1 ml, were incubated for 10 min at room temperature and then centrifuged for 15 min. The supernatant was taken as much as 0.75 ml, 2.5 ml was added Na2CO3 (0.5 M), 0.5 ml folin reagent and allowed to stand for 15 minutes at room temperature, and then do an absorbance reading at 578 nm. Measurements were conducted by mixing 0.5 ml of buffer pH 7 to pH 12, plus 0.5 ml and 1 ml casein enzyme included in the reaction tube. Incubation at 37°C for 10 minutes, then add TCA 10% of 1 ml, were incubated for 10 min at room temperature and then centrifuged for 15 min. The supernatant was taken as much

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as 0.75 ml, 2.5 ml was added Na2CO3 (0.5 M), 0.5 ml folin reagent and allowed to stand for 15 minutes at room temperature, and then do an absorbance reading at 578 nm.

Determination of total protein concentration

Analysis of total protein concentration was performed based on the Lowry et al., (1951) [10] method, using

BSA (Bovine Serum Albumin) as a protein standard. The initial step in the process of measuring total protein is to create multiple reagents, it was: reagents A (2% Na2CO3 in 0.1 N NaOH), reagent B (0.5% in 1% CuSO4 K. Na-Tartat), reagent C (50 ml reagent A mixed with 1 ml of reagent B were homogenized) and reagent E (1: 1 between the folin and distilled water). The process is initiated by mixing 0.2 ml of the enzyme was mixed with 1 ml of reagent C, and then incubated at room temperature for 10 min. After that amount of 0.1 ml of reagent E was mixed until homogeneous and incubated at room temperature for 30 min. Furthermore, the level of absorbance of the sample was measured using a spectrophotometer with a wavelength λ= 750 nm. Determinations of protein enzyme molecular weight with SDS-PAGE

Gel preparations

Two glass plates was fixed together and the separation rubber was put between plates. Gel made beforehand that under gel (gradient gel). SDS-PAGE buffer was made from SDS 12% (0.12 ml), 30% polyacrylamide (4,8 ml), 1 M Tris pH 8.8 (3 ml) and distilled water (4.08 ml), were mixed and stirred in a beaker glass. TEMED was added 10 µl and the last was APS 100 µl. The mixture was put in a molded gel (mini slab gel) using a micropipette until about 1 cm from the top plate. When added a gel solution to the slab, forming a bubbles was avoided because it would disrupt the process of separation (Bio-Rad, 2014) [11]. The part that is not filled gel were given distilled water for leveling gel is formed and avoid air contact with the gel. Furthermore, the gel allowed undergoing polymerization for about 30 min. A layer of water on top of the gel was dried with a tissue. Gel top (stacking gel) was made after the bottom gel is formed. The Buffer, consisted of SDS 10% (0.3 ml), 30% polyacrylamide (2 ml), 1 M Tris pH 6.8 (2.62 ml) and distilled water (15.8 ml) were mixed and stirred in a beaker glass. Then added TEMED (5 µl) and the last is APS (50 µL) while still stirring. Gel solution on pipette and put into a mini slab above the resolving gel until reaching the top plate. Then comb installed quickly to avoid the formation of gel before the comb is inserted. When inserting the comb necessary caution so that no air is trapped. After the gel is formed, thus forming a raised comb wells, then poured running buffer (Bio-Rad, 2014) [11]. Sample preparations for SDS-PAGE

Purified enzymes at 10 µl was pipetted and put into Eppendorf tube, added to the loading buffer for 10 µl and heated at 100°C for 2 min. After it was cooled at room temperature, samples at 10 µl was injected into the glass wells carefully by using a micropipette, each taking a different sample micropipette tip must be replaced. To start running the electrophoresis apparatus was connected to the power supply with the current on the plate 1 (28 mA), voltage (110 V) and a second plate (30 mA) with a voltage of 130 V (Bio-Rad, 2014) [11]. Staining gel

This step requires a solution for staining for protein gels and dye de-staining solution to wash or paint

in gel and clarify the protein bands were formed. Staining solution made of 1 liter with a mixture of Coomassie Blue R-250 1.0 grams, methanol 450 ml, 450 ml distilled water 100 ml of glacial acetic acid. Make a solution of 1 liter destining with a mixture of 100 ml of methanol, glacial acetic acid 100 ml, and 800 ml distilled water. The gel was soaked in 20 ml staining solution while shaken with a shaker for 20 minutes; then the staining solution was poured back into the container. Then wash in 150 ml of acetic acid or 12.5% of TCA solutions. Gel soaked in a de-staining solution for 20 minutes while shaken. Recently washed with acetic acid / 12.5% TCA solution until clear and the protein bands clearly visible (Bio-Rad, 2014) [11]. Results and Discussion

Appropriate (NH4)2SO4 concentration for purification of alkaline protease from Bacillus cereus LS2B

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Analysis of enzyme purification was begins with determining the of (NH4)2SO4 concentration that suitable for precipitation of an alkaline protease enzyme from Bacillus cereus LS2B. The importance of determining the concentration of (NH4)2SO4 was due to it determines the level of activity and the amount of enzymes that used in the subsequent purification step. The concentration of (NH4)2SO4 that is appropriate to the character of the protein enzyme precipitated enzyme would be maximized. Many of the references mentioned that the character of an alkaline protease enzyme is excellent precipitated with ammonium sulfate concentrations between 50-80%. Kim et al., (2001) [12] reported that the character protease from Bacillus cereus KCTC 3674 were studied excellent precipitated with ammonium sulfate concentration of 80% as seen from the amount of sediment and enzyme activity were obtained. Similar to the results of research Singh et al., (2012) [13] stated that the concentration of ammonium sulfates 80%, which is best used to precipitate proteins from enzymes Bacillus

cereus SIU1. Data from some researchers in accordance with the results obtained, in which the best concentration of (NH4)2SO4 precipitation used for alkaline protease Bacillus cereus LS2B origin is the concentration of 80% (Fig 1). The activity obtained in pellet from enzyme which precipitated using 80% (NH4)2SO4 was 121.73 U/ml higher than the concentration of 50% (69.4 U/ml), 60% (79.1 U/ml) and 70% (75 U/ml), respectively. Inversely, the activity of the supernatant was found lowest activity in supernatants derived enzyme at a concentration of 80% (34.72 U/ml). Moreover, based on the comparison of the activity of the pellets (121.73 U/ml) and the supernatant (34.72 U/ml), it can be concluded that the enzyme protein precipitation process very well happens at a concentration of 80% (NH4)2SO4.

Fig 1. Data on the activity of enzyme pellet and supernatant precipitation results using ammonium sulfate concentrations (50, 60, 70 and 80%).

The best concentration of alkaline protease enzyme used in the purification process[R1]

Optimization of the use of enzymes to be crucial because it is associated with efficiency and value to the

enzyme, the enzyme that little volume, but give a high activity in catalyzing the substrate into consideration the variables that must be known. Tests to determine the best concentration of the enzyme alkaline protease Bacillus cereus LS2B is to look at the highest activity among the various concentrations of enzymes used are (25, 50, 75 and 100%). The level test of enzyme activity is passed by modifying the method Bergmeyer and Grassl 1983 at the collecting solution of enzyme catalysis (tyrosine) after addition of TCA 5% (Trichloroacetic Acid) with a filtering technique using Whatman paper and centrifugation. Compare between concentrations of tyrosine activity (25, 50, 75 and 100%) by filtration and centrifugation shown in (Fig 2). From the data in fig 2 demonstrates that the use of different levels of the enzyme concentration significant (p> 0.05) to the increased activity of the enzyme where the highest activity is obtained at a concentration of 100% to the level of enzyme activity of 310.05 U / ml. Collecting of tyrosine (reaction yield of enzyme and substrate) through the technique of centrifugation and filtration techniques do not give real effect to the increased activity of the enzyme. Bugg (2004) [14] reported that the higher the concentration of enzyme used in the more quickly catalyzes a substrate, catalysis speed is directly proportional to the activity of the enzyme. Centrifugation, not a significant effect compared to screening but of each enzyme concentration, centrifugation provides a higher level of activity than filtering. This is interpreted as the result of an enzyme reaction substrate to obtain more, so that when the folin reagent addition, the enzyme becomes more concentrated because the enzymes that clean increase the enzyme active site (Bugg, 2004) [14]. It is also reported by (Wardani and Nindita, 2012) [15] in the presence of non-

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protein compounds to the enzyme interfere with the enzyme active site and thus diminishes the activity of the enzyme.

Fig 2. The activity of various concentrations of the enzyme by modifying the method Bergmeyer and Grassl 1983 on the part of collecting the results of catalysis enzyme reaction to the substrate (filtered and centrifuged).

Character of the HiTrap ion exchange tool

Because of the tool used HiTrap ion exchange newly imported it must be known concerning the

characterization of the flow rate, the amount of elution per minute, and the activity of each fraction. Column HiTrap ion exchange used filled matrix DEAE Sepharose FF (column length of 14.5 cm x 1.5 cm) with a sample volume that can be accommodated is 25 ml. Equilibration buffer used contained (0,1N KH2PO4 and NaOH 0.2 N) to pH 8 and the elution buffer from a mixture of equilibration buffer pH 8 plus 0.5 N NaCl. From the results of the characterization of HiTrap ion exchange tool can conclude several things such as the flow rate of the HiTrap ion exchange tool is 1.5 ml min-1 and the number of fractions per running a number of 52.5 ml once accommodated in 35 tubes each tube containing 1, 5 ml elution. Of each fraction was measured by absorbance wavelength λ = 578 nm absorbance of each activity is calculated using the method Bergmeyer and Grassel 1983.

Results activity alkaline protease enzyme Bacillus cereus LS2B using a HiTrap ion exchange (Fig 3), the highest activity is obtained at 2 peak fractions, a namely fraction of 236 to 15 with activity, 06 U / ml and the fraction of 226 to 20 with activity, 40 U / ml.

Fig 3. Activity of each fraction in the determination of the character HiTrap ion exchange tool Purification of alkaline protease enzyme Bacillus cereus LS2B with 3 step

40.72

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Alkaline protease enzyme which has been produced from Bacillus cereus LS2B purified through three steps

of purification. The enzyme produced from Bacillus cereus LS2B by growing the bacteria in culture media containing skim milk as a substrate. The step of purification includes collecting crude enzyme by centrifugation, the crude enzyme obtained then precipitation using ammonium sulfate (NH4)2SO4 80%. Followed by dialysis to remove salts and non-protein compounds to the enzyme and the final result of ammonium precipitation followed by ion exchange process using HiTrap ion exchange with column length 14.5 cm and a diameter of 1.5 cm were filled matrix DEAE FF sepharose.

The step of purification is performed acquired data as shown in (Table 1). A crude enzyme in ammonium sulfate precipitation using 80% ammonium sulfate increased the specific activity of 0.4 U / mg to 0.5 U / mg and a yield of 100% on crude enzyme becomes 34.53% on ammonium precipitation. With the increasing in enzyme activity, due to the protein in an enzyme solution apart from water molecules caused by the presence of salt ions competition to attract water molecules. Salt ions attract water molecules from protein caused by the salt ions have a greater solubility than protein enzyme, so that the protein concentration is higher in the solution that causes the specific activity of the enzyme increases (Aulanni'am. 2005 cit Wardani and Nindita, 2012) [15].

But with the mixed salt molecules in the enzyme protein is still not able to maximize the increased activity of the enzyme, salt molecules and non-protein compounds inhibit the enzyme's active side provided with the substrate. To remove residual salts and non-protein compounds of ammonium precipitation results then do dialysis. Dialysis causes salt, and non-protein molecules diffuse into the solution which has a lower pressure passing through the dialysis bag (El-Beltagy et al., 2005) [16]. Based on data in Table 1, after enzyme process of dialysis increased specific activity to 1.8 U / mg at a yield decreased from 100% to 8, 27% and higher purity of up to 4-fold compared to the crude enzyme and ammonium precipitation is 1.

Increased activity due to salt and non-protein molecules diffused from the dialysis bag to the buffer solutions that are outside the dialysis bag through the dialysis membrane pores, so that the protein retained in the dialysis bag becomes purer. This is supported by the opinion of Niola and Widhyastuti (2007) [17] that the molecule has a low weight of the bag is perfect diffuse dialysis at 4 ° C. Increased purity HiTrap continued by using ion exchange, the enzyme flowed in a column filled with a matrix sepharose. The matrix in the column for has a charge so that the purified enzyme based cargo of cations and anions (Matruthiah et al., 2013) [18]. Alkaline protease enzyme has wet properties so positively charged cations thus equilibration buffer used have a pH of 8. At the time of enzyme, sample flowed through the column, a protein that has a positive charge is retained on the matrix sepharose in the column. Protein entrained within a column must be removed from the matrix sepharose coursing elution buffer that has a negative charge anion by adding 0.5 N NaCl. From the use of HiTrap ion exchange specific activity of the enzyme increases with very high at 7.2 U / mg at a yield declined from 100% in the crude enzyme to 2% and the level of purity of the enzyme is increased to 16-fold compared to the crude enzyme. It can be concluded that the character of an alkaline protease enzyme Bacillus cereus LS2B excellent purified using HiTrap ion exchange column filled with a matrix DEAE sepharose FF.

Table 1. Summary of alkaline protease enzyme purification step of Bacillus cereus LS2B

Characterization of the molecular weight of the alkaline protease enzyme of Bacillus cereus LS2B by SDS-

PAGE technique

Characterization of the enzyme is done by identifying the molecular weight of each protein purification

phase using SDS-PAGE (Fig 4). Visualization of results obtained purified protein bands are varied, the results have a 7 band crude enzyme protein with a protein concentration which is not too much where it is reflected from the thin band that formed. This is supported by the opinion of Mehzard et al., (2005) [19] that coomassie brilliant blue (CBB) bind to proteins and protein residues, so more and more residues on the protein concentration and the color blue from the CBB bonding band is getting thicker. Protein profile results ammonium precipitation showed smear results (profile is not good) (line 3), where the condition is caused by a

Purifications step Protein

concentration (mg/ml)

Activity (Unit/ml)

Total protein (mg)

Total activity (units)

Specific activity

(units/mg)

Purification fold

Yield (%)

Cell Free Extract (enzim kasar) 235.80 105.56 139122.00 62280.40 0.4 1 100

Ammonium sulfate (80%) 211.40 102.40 44394.00 21504.00 0.5 1 34.53

Dialysis membrane cell MD44 16.10 28.60 2898.00 5148.00 1.8 4 8.27

Hitrap Ion Exchange 6.60 47.60 165.00 1190.00 7.2 16 2

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high concentration of residual ammonium sulfate in protein enzymes, salt molecule affects the rate of migration of the protein on the gel, so when running SDS-PAGE protein molecule is not separate.

This is supported by the results of the protein profiles on dialysis, where the dialysis process is used to remove residual salts and non-protein molecule enzyme with diffusion technique, the migration of non-protein molecules from the dialysis bag to the bag outside the buffer solution. The loss of non-protein compound of protein enzymes seen in dialysis outcomes (line 4) in which the protein bands separated by respective weight of 60 kDa, 34 kDa, 17 kDa and 13 kDa. Protein bands that look thin, it is interpreted that the concentration of the enzyme dilution buffers is too high, with 10 times dilution (enzyme 1: buffer 9). Tremacoldi et al., (2007) [20] reported that a mixture of enzyme and buffer from the results of his research is 10:50 or (1:5). Asker et al., (2013) [6] also undergo dialysis to enzyme alkaline protease from Bacillus megaterium with a ratio of enzymes and buffers are (1:2), so that the better comparison between the buffer and the enzyme protein concentrations were stuck in the pockets of dialysis is higher.

The result of fraction purified showed a decrease in the number of HiTrap ion exchange protein bands from the dialysis is by weight 34 kDa, 17 kDa, and 13 kDa, and the protein concentration is very high, it is visible from a thick band visualization. Conditions are thick band indicating that the HiTrap ion exchange tool is able to purify and increase the concentration of alkaline protease enzyme protein. The molecular weight of alkaline protease enzymes identified in accordance with the opinion of Miyaji et al., (2005) [21] that the enzyme alkaline protease have an average molecular weight ranging from 20-50 kDa. Research Orhan et al., (2005) [22] reported that the molecular weight of the protein enzyme alkaline protease from Bacillus cereus was 37 kDa. Prakash el

al., (2005) [23] conducted a study of Bacillus cereus with the results of studies suggest that the molecular weight of alkaline protease enzyme origin of Bacillus cereus is 30 kDa. Singh et al., (2012) [13] also reported that the alkaline protease enzyme produced by Bacillus cereus SIU1 has a proteins molecular weight of 22 kDa. Other researchers are Saxena and Singh (2015) [24] is also reported that the protein molecular weight produced alkaline protease enzyme from Bacillus cereus B80 has a molecular weight of 26 kDa protein. So it can be assumed and drawn a conclusion that the enzyme alkaline protease produced by Bacillus cereus strain LS2B is by weight 34 kDa.

Fig 4. SDS-PAGE protein enzyme after purification steps. SDS-PAGE using a gel concentration of 12%. Lines 1. Band protein marker,

Line 2. Extract free cell (crude enzyme) (10 µl), line 3. The results of the concentration of ammonium sulfate precipitation 80% (10 µl), line 4. The enzyme samples after dialysis (10 µl), Line 5. Protein enzyme after the process of HiTrap ion exchange (10 µl).

Conclusion

The concentration of ammonium sulfate that is used 80% and the concentration of enzyme used 100%. Characters HiTrap ion exchange tool used with a flow rate of 1.5 ml min-1 and the number of fractions of 52.5 ml per one running that fit into the 35 tubes. Very high purification occurs in HiTrap ion exchange step which reached a 16-fold (fold purification) of crude enzymes and yielded a very high decline from 100% to 2%. There are three predominant protein molecules from the SDS-PAGE, of step HiTrap ion exchange, with a weight of 34 kDa protein band, 17 kDa, and 13 kDa. For estimation and based on the results of the study of literature that a specific molecular weight alkaline protease from Bacillus cereus LS2B is 34 kDa. Acknowledgements

This research was supported by Scholarship Indonesia Endowment Found for Education Ministry of Finance/ Lembaga Pengelola Dana Pendidikan (LPDP), with sponsor NO. S-1783/LPDP.3/2015 and Decree of awardees

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NO. 000699/Te/M/AF-2014. I gratefully thanks to the LPDP because it has funded studies and my research in full.

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