UNITES DE RECHERCHE - medecine.univ-amu.fr · MEDIANNIKOV Oleg CR IRD Dakar Sénégal/Marseille MEGE Jean-Louis PU-PH MERHEJ Vicky MCF MILITELLO Muriel TCH AMU CDD MILLION Matthieu

Unité de Recherche.sur les Maladies Infectieuses Tropicales Emergentes (URMITE)

Mise à jour : janvier 2016 1/27

UNITÉ DE RECHERCHE UMR 7278

Unité de Recherche sur les Maladies Infectieuses Tropicales Emergentes (URMITE)

DIRECTEUR : RAOULT Didier ADRESSE : Faculté de Médecine Site Timone TELEPHONE : 04 91 32 43 75/04 91 32 44 80 COURRIEL : [email protected] SITE WEB : www.mediterranee‐infection.com ECOLE DOCTORALE : Sciences de la Vie et de la Santé (ED 062) RATTACHEMENTS : AMU (UM63) - CNRS - (UMR7278) - IRD (198) - INSERM (U1095) - SSA (Marseille) - AP-HM (Pôle 8) POLES HOSPITALIERS : 2 – Gynépôle Marseille (Intersites) 4 – Anesthésie-Urgences-Réa (Nord) 8 - Maladies Infectieuses (Intersites) 10 – Urologie Néphrologie (Conception) 13 – Pédiatrie Médico-Chirurgicale (Intersites) 16 – Cardio-Vasculaire-Thoracique (Intersites) 18 – Biologie (Intersites) 28 – DACCORD (Intersites) 30 – Centre de Gestion des Blocs (Nord) DISCIPLINES D’APPARTENANCES : DS 5 - Biologie,médecine, santé SPECIALITÉS : Maladies Infectieuses GESTIONNAIRES UNITÉ : VERIN Francine (CNRS), CORONA Cathy, COMBE Isabelle (AMU), NADARADJANE Sacy (IRD)



EFFECTIFS Enseignants-Chercheurs : 53 Chercheurs EPST : 7 Autres Enseignants-Chercheurs et Chercheurs : 19 BIATSS/ITA : 52 Autres BIATSS/ITA : 66 Post-doctorants 9 Doctorants 98

EFFECTIFS AFFINÉS Enseignants-Chercheurs : 54 Rattachement/Tutelle

AHU : 2 Médecine CCA : 1 Médecine MCF : 6 AMU MCU-PH : 5 AMU PAC : 9 AMU PU : 2 AMU PU : 4 Etranger Université PU-PH : 23 Médecine PU-PH : 1 Autre Composante

Chercheurs EPST : 7

DR : 2 CNRS/IRD CR : 2 CNRS CR : 2 IRD CR : 1 INSERM

Autres Enseignants-Chercheurs et Chercheurs : 19

Chercheur contractuel : 1 IRBA CR : 3 DRSSA TOULON Médecin : 1 IRD Dakar PH : 5 AP-HM Chercheur : 1 Fondation Chercheurs Armée 8 SSA

BIATSS/ITA : 52

IR : 5 AMU IE : 6 AMU AI : 1 AMU TCH : 6 AMU ADT : 3 AMU Agent d’entretien : 2 AMU IR : 2 CNRS IE : 2 CNRS TCH : 1 CNRS IR : 3 INSERM IE : 1 INSERM IE : 7 IRD AI : 2 IRD TCH : 7 IRD ADT : 4 IRD



Autres BIATSS/ITA : 66

Adjoint administratif hospitalier : 9 AP-HM Ingénieurs hospitaliers: 12 AP-HM Techniciens hospitaliers : 31 AP-HM Cadres hospitaliers : 3 AP-HM Agent d'entretien : 1 AP-HM TCH : 1 Fondation ADM : 2 Fondation Cadres IRD 2 IRD Dakar TCH SSA 5 SSA

Post-Doctorants : 9 Doctorants : 98 MI : MEDITERRANEE INFECTION

PERSONNELS IMPLIQUÉS DANS LA RECHERCHE

Téléphone UM63 MARSEILLE: 04 91 32 43 75 Téléphone IRD DAKAR : +221338493580

Téléphone Méditerranée Infection : 04 91 32 46 34

ABEILLE Annick TCH AP-HM ABI-RACHED Laurent CR CNRS ATIP ABOTSI Kokou Mensak TCH IRD Logisticien Dakar ABOUDHARAM Gérard PU - Pharmacie ALMERAS Lionel CR - Chercheur contractuel MI ex IRBA AMPHOUX Bernard TCH AP-HM ANDRIEU Véronique MCU-PH ANGELAKIS Emmanouil PAC ARMSTRONG Nicholas Ingenieur Hospitalier - AP-HM AUDOLY Gilles IR INSERM AZZA Said IGR AMU BA Fambaye TCH IRD, Dakar BACHAR Dipankar IR CNRS BALDE Oumar TCH IRD, Dakar BAPTISTE Emeline Ingenieur Hospitalier - AP-HM BARBOZA Louis TCH IRD, Dakar BARNAUD André TCH AMU BARRACCO Priscilla Adjoint Administratif Hosp. APHM BARRASSI Lina TCH AP-HM BASCO Leonardo DR- IRD Dakar BASSENE Hubert I - ingenieur IRD, Dakar BECHAH Yassina IR INSERM BEDOTTO Marielle Ingénieur Hospitalier - AP-HM BEN AMARA Amira IGE AMU BENAKHLA Hmed PU Université d'El Tarf BENYACOUB Slim PU Université d'Annaba

BERENGER Jean-Michel TCH AP-HM

BERLAND Yvon PU-PH BITAM Idir PU- Maître de Recherche à l'Institut Pasteur d'Alger

BITTAR Fadi MCF Pharmacie



BLANC-TAILLEUR Caroline IGR AMU CDD

BOILEAU Céline IR INSERM

BORG Audrey TCH AP-HM

BOUGANALI Charles TCH IRD

BREGEON Fabienne MCU-PH

BRETELLE Florence PU-PH

BROSSARD Catherine TCH AP-HM

BROUQUI Philippe PU-PH BUFFET Sylvain Ingénieur Hospitalier - AP-HM CAL Céline TCH AP-HM CAMOIN Laurence MCU-PH CAPUTO Aurélia Ingénieur Hospitalier - AP-HM -CDD CARUSO Gilbert Cadre TSH CASALTA Jean-Paul PH CHABRIERE Eric PU AMU CHANTELOUP Alice TCH - Recherche MI CHAUVANCY Gilles AI IRD, Dakar TANDA Samantha TCH AP-HM COLLIN Juline TCH AP-HM COLSON Philippe PU-PH COMBE Isabelle IGE AMU COMMOT Muriel TCH AMU CORONA Cathy ADT AMU COSTAGLIOLA Olivier TCH AP-HM CUSACK Olga Secrétaire Hosp. AP-HM DAVOUST Bernard CR -Chercheur SSA DECLOQUEMENT Philippe Ingénieur Hospitalier - AP-HM DELERCE Jeremy Ingénieur Hospitalier - AP-HM DELORS Marion PAC DESNUES Christelle CR CNRS DIAGNE Nafissatou I - ingenieur IRD, Dakar DIALLO Aldiouma M - Medecin IRD, Dakar DIATTA Georges I - ingenieur IRD, Dakar DIOUF Papa Niokhor ADT IRD, Dakar D'JOURNO Benoît PHU DODDOLI Christophe PU-PH DOMINGO Ivana Adjoint Administratif Hosp. DOUCOURE Souleymane I - ingenieur IRD, Dakar DOUDON Emilie TCH AP-HM DRANCOURT Michel PU-PH DUBOURG Gregory AHU DUBUS Jean-Christophe PU-PH DUCLOS Nathalie TCH AP-HM DULAC Magalie TCH AP-HM EDOUARD Sophie MCF EL KARKOURI Khalid IGR AMU



ELDIN Carole PAC ESTEL Michelle TCH AP-HM FALL Bassirou I - Superviseur IRD, Dakar FAYE Adiuouma TCH IRD Enquêteur, Dakar FENOLLAR Florence PU-PH FERNANDEZ Marion Adjoint Administratif Hosp.

FEUERSTEIN Jean-Marc TCH AMU

FILOSA Valérie Adjoint Administratif Hosp. FILOSA Véronique Cadre medico technique laboratoire AP-HM

FLAUDROPS Christophe IE AP-HM

FORESTIER Claire Lise CR INSERM

FOURNIER Pierre-Edouard PU-PH

FRANCOIS Séverine Cadre Adm. Mediterrannée Infection GAMBARELLI Laure Cadre administratif -AP-HM GAUTRET Philippe PH GHIGO Eric DR CNRS GLAZUNOVA Olga IE AP-HM GORRETA Rose ATRF AMU GOTTREAU Anne-Marie ADT AMU GOURIET Frédérique MCU-PH GRIMALDIER Clio TCH AP-HM GROS Thomas TCH AP-HM HABIB Gilbert PU-PH HADJADJ Linda TCH AMU HONNORAT Estelle AH - pôle 8 JARDOT Priscilla TCH AP-HM JUNOY Stéphanie TCH AP-HM KEITA Alpha TCH AP-HM KERBAJ Jad PAC KHEILAIFA Saber IGR - MI contractuel KOWALCZEWSKA Malgo IGE AMU LA SCOLA Bernard PU-PH LABAS Noémie TCH AMU CDD LAGIER Jean-Christophe MCU-PH LAJAUNIE Claire IE INSERM LEBIDEAU Marion TCH AP-HM LEONE Marc PU-PH (HDR) LEPIDI Hubert PU-PH LEPOLARD Catherine AI AMU LEVASSEUR Anthony PU AMU LEVY Pierre-Yves PH LIOTAUD Gilles TCH AP-HM, CDD LONGINOTTI Sandrine Adjoint Administratif Hosp. CDD LOPEZ Natalia ADM Protisvalor CDD MANE Youssouph I - ingenieur IRD MARIE Jean-Lou CR- Chercheur DRSSA Toulon - SSA



MATI Marie-Charlotte TCH AP-HM MEDIANNIKOV Oleg CR IRD Dakar Sénégal/Marseille MEGE Jean-Louis PU-PH MERHEJ Vicky MCF MILITELLO Muriel TCH AMU CDD MILLION Matthieu PHUT MONTEIL-BOUCHARD Sonia IE CNRS MOAL Valérie PH

NADARADJANE Sacy AI IRD NAPPEZ Claude IGE AMU

NDIAYE Prosper ADT Gestion IRD, Dakar

NDIAYE Emilie ADT secrétariat IRD, Dakar NDIAYE Tofene Cadre Responsable administratif Centre Niakhar

NDIAYE Ousmane I - informaticien IRD, Dakar

N'GUYEN Thi Thien TCH AP-HM

OUANEZAR Abdelkrim Adjoint Administratif Hosp.

PAGES Frédéric CR -Chercheur DRSSA Toulon

PAGNIER Isabelle MCF PAPAZIAN Laurent PU-PH

PAROLA Philippe PU-PH

PERREAL Céline TCH AP-HM

PINAULT Lucille IE AP-HM CDD PITACCOLO Micheline TCH - Adm. Mediterrannée Infection MI

POUVELLE Bruno IR AMU

PRUDENT Elsa Ingénieur Hospitalier - AP-HM

RAOULT Didier PU-PH

RAYMOND Pascale TCH AP-HM

REYNAUD-GAUBERT Martine PU-PH

REYNIER Pauline IE AMU CDD RICHEZ Magali TCH AP-HM ROBERT Catherine IR AMU ROCH Antoine PU-PH RODRIGUEZ Julie TCH CDD ROLAIN Jean-Marc PU-PH SALACHA Richard Ingénieur Hospitalier - AP-HM SALEZ Nicolas IR - MI contractuel SALVAT François ADT AMU SELIGMAN Hervé PU A*MIDEX invité SENG Piseth PAC SENGHOR Paul TCH IRD SOKNA Cheikh CR IRD SOTO ALADRO Alberto IE AMU CDD SOULA Georges PAC SOW Mouhamadou Baba I- informaticien IRD, Dakar STEIN Andreas PU-PH



TAMALET Catherine PH TEMMAN Sarah IR - MI contractuel TERRAS Jérôme AI Mediterranée Infection MI TEXTORIS Julien PHU TEYSSEIRE Marie-Christine ATRF AMU THIERRY MIEG Marion PA THOMAS Pascal-Alexandre PU-PH THOMAS Laurence TCH AP-HM THUNY Franck PU-PH TISSOT-DUPONT Hervé PH TOROSSIAN Danielle Agent d'entretien TOUATI Caroline Adjoint Administratif Hosp. TOURE Malick ADT Logisticien IRD, Dakar TROUPLIN Virginie IR CNRS TUSA Marie Adjoint Administratif Hosp. CDD VERIN Francine TCH CNRS VIAL Emeline TCH WEBER Pascal IE CNRS WURTZ Nathalie IGE AMU

PERSONNELS AVEC HDR ABOUDHARAM Gérard MCF ALMERAS Lionel Chercheur contractuel IRBA BADIAGA Sékéné PH BASCO Leonardo DR IRD BENYACOUB Slim PU Université d'Annaba BERLAND Yvon PU-PH BITAM Idir Maître de Recherche à l'Institut Pasteur d'Alger

BREGEON Fabienne MCU-PH BRETELLE Florence PU-PH BROUQUI Philippe PU-PH D’JOURNO Xavier PHU DODDOLI Christophe PU-PH DRANCOURT Michel PU-PH DUBUS Jean-Christophe PU-PH FENOLLAR Florence MCU-PH FOURNIER Pierre-Edouard PU-PH GAUTRET Philippe PH GHIGO Eric CR CNRS HABIB Gilbert PU-PH LA SCOLA Bernard PU-PH LEONE Marc PU-PH LEPIDI Hubert PU-PH MEGE Jean-Louis PU-PH MOAL Valérie PH MOTTOLA Giovanna MCU (Univ Naples) (HDR) MOUFFOK Nadjet PU CHU Oran PAPAZIAN Laurent PU-PH



PAROLA Philippe PU-PH POUVELLE Bruno IGR PRADINES Bruno Chercheur IRBA RAOULT Didier PU-PH REYNAUD-GAUBERT Martine PU-PH ROCH Antoine PU-PH ROLAIN Jean-Marc PU-PH SIMON Fabrice PU HIA STEIN Andreas PU-PH SOKHNA Cheikh CR THOMAS Pascal-Alexandre PU-PH THUNY Franck PHU

EQUIPES DE RECHERCHE et THEMATIQUES

EQUIPE : E1 - Unité des Rickettsies et des pathogènes émergents RESPONSABLE : RAOULT Didier THEMATIQUE : Découverte des pathogènes émergents. Génomique des rickettsies. Post-génomique. Maladie de Wipple EQUIPE : E2 - Tools for the detection, identification and characterisation of emerging pathogens RESPONSABLE : DRANCOURT Michel THEMATIQUE : Microbiogénomique. Paléomicrobiologie EQUIPE : E3 - Infections, gender et pregnancy RESPONSABLE : GHIGO Eric et MEGE Jean-Louis THEMATIQUE : Etude ex vivo des réponses immunes innées et adaptatives. Etude du trafic intracellulaire. Approche intégrée via des modèles animaux spécifiques EQUIPE : E4 - Microorganismes de l'environnement, pneumonies et bioterrorisme RESPONSABLE : LA SCOLA Bernard THEMATIQUE : Nouveaux agents pathogènes de l'eau et étude de la viabilité des microorganisme dans l'eau. Analyse du transcriptome de Mimivirus. Détection, typage et analyse de la virulence des agents de bioterrorisme, (Coxiella burnetii, Rickettsia sp. Et Francisella EQUIPE : E5 - Veille et Approche Entomologique des Maladies Vectorisées Emergentes RESPONSABLE : PAROLA Philippe THEMATIQUE : Veille et prise en charge des maladies infectieuses émergentes vectorisées. Veille sur les microorganismes associés aux anthropodes EQUIPE : E6 - Mucoviscidoses, microbiote et prise en charge thérapeutique RESPONSABLE : ROLAIN Jean-Marc THEMATIQUE : Evaluation de la sensibilité et de la résistance aux agents anti-infectieux. Détection d'agents infectieux émergents et/ou multi-résistants chez les patients atteints de mucoviscidose EQUIPE : E7 - Infections respiratoires sévères émergentes et leur prise en charge RESPONSABLE : PAPAZIAN Laurent THEMATIQUE : Identification de nouveaux agents de pneumonies. Modèle expérimental de pneumonie ; pharmacologie-interactions avec la ventilation mécanique. Optimisation de la prise en charge des infections respiratoires EQUIPE : E8 - Maladies tropicales émergentes RESPONSABLE : PRADINES Bruno THEMATIQUE : Surveillance et émergence des résistances aux antipaludiques. Développement de nouveaux médicaments antipaludiques. Amélioration des techniques diagnostiques du paludisme - Contact homme-moustique. Plasmodium vivax



EQUIPE : E9 - Equipe émergente : Microbiogénomique RESPONSABLE : FOURNIER Pierre-Edouard THEMATIQUE : Génomique bactérienne. Génomique comparative. Evolution. Application diagnostiques EQUIPE : E10 - Equipe émergente PathoVirome RESPONSABLE : DESNUES Christelle THEMATIQUE : Métagénomique. Ecologie virale. Biodiversité. Pathologies EQUIPE : E11 - Maladies infectieuses persistantes et émergentes en Afrique de l'Ouest : détection, épidémiologique et lutte RESPONSABLE : CHEIKH Sokna THEMATIQUE : Paludisme. Biodiversité des pathogènes émergents EQUIPE : E12 - Maladies bactériennes vectorisées au Maghreb RESPONSABLE : BITAM Idir THEMATIQUE : Surveillances entomologiques et mammalogiques des agents pathogènes. Détections moléculaires et isolements des agents pathogènes vectorisés. Inventaire des bactéries vectorisées par les puces et les tiques en Maghreb EQUIPE : E13 - Bio cristallographie, biotechnologie et enzymologie structurale RESPONSABLE : CHABRIERE Eric THEMATIQUE : Diagnostic Clinique (identification de bactéries et organismes, dosage d’antibiotiques et développement de méthodes (biotypage, protéomique, chromatographie) EQUIPE : E14 - Molecular Parasitology and signaling RESPONSABLE : FORESTIER Claire THEMATIQUE : interactions hôte-pathogènes durant la leishmaniose visecérale. EQUIPE: E15 – Genome-wide reconstruction of the evolution of the immune system in vertebrates RESPONSABLE :ABI-RACHED Laurent THEMATIQUE : Etude des bases génétiques de la maladie de Whipple, analyse génétique des planaires, analyse génétique des DING et étude comparative des génomes de Borrelia

PERSONNELS PAR EQUIPE DE RECHERCHE EQUIPE : E1 - Unité des Rickettsies et des pathogènes émergents RESPONSABLE : RAOULT Didier THEMATIQUE : Découverte des pathogènes émergents. Génomique des rickettsies. Post-génomique. Maladie de Wipple ANGELAKIS Emmanouil PAC BITTAR Fadi MCF CASALTA Jean-Paul PH DAVOUST Bernard Chercheur DRSSA Toulon EDOUARD Sophie AHU FENOLLAR Florence MCU-PH HABIB Gilbert PU-PH LAGIER Jean-Christophe AHU LEVY Pierre-Yves PH MARIE Jean-Lou Chercheur DRSSA Toulon MERHEJ Vicky MCF MILLION Matthieu AHU RAOULT Didier PU-PH THUNY Franck PHU EQUIPE : E2 - Tools for the detection, identification and characterisation of emerging pathogens RESPONSABLE : DRANCOURT Michel THEMATIQUE : Microbiogénomique. Paléomicrobiologie ABOUDHARAM Gérard MCF DRANCOURT Michel PU-PH



EQUIPE : E3 - Infections, gender et pregnancy RESPONSABLE : GHIGO Eric et MEGE Jean-Louis THEMATIQUE : Etude ex vivo des réponses immunes innées et adaptatives. Etude du trafic intracellulaire. Approche intégrée via des modèles animaux spécifiques BEN AMARA Amira IGE AMU BRETELLE Florence PU-PH (HDR) BUFFAT Christophe MCU-PH GHIGO Eric CR CNRS (HDR) LEONE Marc PU-PH (HDR) LEPOLARD Catherine ASI AMU MEGE Jean-Louis PU-PH (HDR) TROUPLIN Virginie IR CNRS EQUIPE : E4 - Microorganismes de l'environnement, pneumonies et bioterrorisme RESPONSABLE : LA SCOLA Bernard THEMATIQUE : Nouveaux agents pathogènes de l'eau et étude de la viabilité des microorganisme dans l'eau. Analyse du transcriptome de Mimivirus. Détection, typage et analyse de la virulence des agents de bioterrorisme, (Coxiella burnetii, Rickettsia sp. Et Francisella LA SCOLA Bernard PU-PH BERLAND Yvon PU-PH COLSON Philippe PU-PH LEPIDI Hubert PU-PH MOAL Valérie PH PAGNIER Isabelle MCF EQUIPE : E5 - Veille et Approche Entomologique des Maladies Vectorisées Emergentes RESPONSABLE : PAROLA Philippe THEMATIQUE : Veille et prise en charge des maladies infectieuses émergentes vectorisées. Veille sur les microorganismes associés aux anthropodes BADIAGA Sékéné PH BROUQUI Philippe PU-PH GAUTRET Philippe PH PAROLA Philippe PU-PH ALMERAS Lionel CR MI EQUIPE : E6 - Mucoviscidoses, microbiote et prise en charge thérapeutique RESPONSABLE : ROLAIN Jean-Marc THEMATIQUE : Evaluation de la sensibilité et de la résistance aux agents anti-infectieux. Détection d'agents infectieux émergents et/ou multi-résistants chez les patients atteints de mucoviscidose ANDRIEU Véronique MCF BARNAUD André TCH AMU COMMOT Muriel TCH AMU DUBUS Jean-Christophe PU-PH HADJADJ Linda TCH AMU REYNAUD-GAUBERT Martine PU-PH ROLAIN Jean-Marc PU-PH EQUIPE : E7 - Infections respiratoires sévères émergentes et leur prise en charge RESPONSABLE : PAPAZIAN Laurent THEMATIQUE : Identification de nouveaux agents de pneumonies. Modèle expérimental de pneumonie ; pharmacologie-intercations avec la ventilation mécanique. Optimisation de la prise en charge des infections respiratoires BREGEON Fabienne MCU-PH D'JOURNO Benoît PHU DODDOLI Christophe PU-PH FOREL Jean-Marie PH PAPAZIAN Laurent PU-PH ROCH Antoine PU-PH THOMAS Pascal PU-PH



EQUIPE : E8 - Maladies tropicales émergentes RESPONSABLE : PRADINES Bruno THEMATIQUE : Surveillance et émergence des résistances aux antipaludiques. Développement de nouveaux médicaments antipaludiques. Amélioration des techniques diagnostiques du paludisme - Contact homme-moustique. Plasmodium vivax PRADINES Bruno Pharmacien en chef BASCO Leonardo DR1 BRIOLANT Sébastien Médecin en chef MADAMET Marylin IEF BOGREAU Hervé ASCr DORMOI Jérôme ASCr POUVELLE Bruno Ing BOUCHIBA Housem TPS Tech ALMAVICT Rémy TLCN Tech BENOIT Nicolas TLCN Tech FONTAINE Albin Ascr MOSNIER Joel TLCS Tech NGUYEN Christophe TLCS Tech ALMERAS Lionel Chercheur contractuel IRBA EQUIPE : E9 - Equipe émergente : Microbiogénomique RESPONSABLE : FOURNIER Pierre-Edouard THEMATIQUE : Génomique bactérienne. Génomique comparative. Evolution. Application diagnostiques FOURNIER Pierre-Edouard PU-PH GOURIET Frédérique MCU-PH LEVASSEUR Anthony PU EQUIPE : E10 - Equipe émergente PathoVirome RESPONSABLE : DESNUES Christelle THEMATIQUE : Métagénomique. Ecologie virale. Biodiversité. Pathologies DESNUES Christelle CR1 CNRS (HDR à soutenir en janvier) MONTEIL-BOUCHARD Sonia E CNRS TEMMAM Sarah IR CNRS HALARY Sébastien POST-DOCTORANT ANR RASCOVAN Nicolas POST-DOCTORANT A*MIDEX DURAISAMY Raja POST-DOCTORANT MI GAUDIN Maxime DOCTORANT MNRT EQUIPE : E11 - Maladies infectieuses persistantes et émergentes en Afrique de l'Ouest : détection, épidémiologique et lutte RESPONSABLE : CHEIKH Sokna THEMATIQUE : Paludisme. Biodiversité des pathogènes émergents NDIAYE Prosper ADT Gestion IRD DIOUF Papa Niokhor ADT IRD TOURE Malick ADT Logisticien IRD NDIAYE Emilie ADT secrétariat IRD CHAUVANCY Gilles AI IRD SOKNA Cheikh CR IRD NDIAYE Ousmane I - informaticien IRD BASSENE Hubert I - ingenieur IRD DIAGNE Nafissatou I - ingenieur IRD DIATTA Georges I - ingenieur IRD DOUCOURE Souleymane I - ingenieur IRD MANE Youssouph I - ingenieur IRD DIALLO Aldiouma M - Medecin IRD BA Fambaye TCH IRD BALDE Oumar TCH IRD BARBOZA Louis TCH IRD



BOUGANALI Charles TCH IRD SENGHOR Paul TCH IRD FAYE Adiuouma TCH IRD Enquêteur ABOTSI Kokou Mensak TCH IRD Logisticien NDIAYE Tofene Cadre Responsable administratif Centre Niakhar FALL Bassirou I - Superviseur IRD SOW Mouhamadou Baba I- informaticien IRD EQUIPE : E12 - Maladies bactériennes vectorisées en Maghreb RESPONSABLE : BITAM Idir THEMATIQUE : Surveillances entomologiques et mammalogiques des agents pathogènes. Détections moléculaires et isolements des agents pathogènes vectorisés. Inventaire des bactéries vectorisées par les puces et les tiques en Maghreb BENYACOUB Slim PU Université d'Annaba BITAM Idir Maître de Recherche à l'Institut Pasteur d'Alger (HDR) MOUFFOK Nadjet PU CHU Oran BENAKHLA Hmed PU Université d'El Tarf EQUIPE : E13 - Bio cristallographie, biotechnologie et enzymologie structurale RESPONSABLE : CHABRIERE Eric THEMATIQUE : Etude structurale et enzymatique des protéines, Etude des protéines antivirale DING, Bioingénierie d’une enzyme dextrement robuste pour décontaminer les agents neurotoxiques de guerre et les insecticides, Bioingénierie d’une enzyme dextrement robuste pour atténuer la virulence bactérienne. Etudes des nanons. CHABRIERE Eric PU RICHEZ Magali AI, AMU LOPEZ Natalia Secrétaire, AMU CDD EQUIPE : E14 - Molecular Parasitology and signaling RESPONSABLE : FORESTIER Claire THEMATIQUE : interactions hôte-pathogènes durant la leishmaniose visecérale. EQUIPE: E15 – Evolution of Immune System and Host-Pathogen Interactions RESPONSABLE : ABI-RACHED Laurent THEMATIQUE Etude de l'évolution du système immunitaire, étude de la diversité immunitaire humaine, analyse génétique des LILR et des BTN.

ACCUEIL MASTERS Pathologie Humaine : Maladies transmissibles et pathologies tropicales - Aix-Marseille

EQUIPEMENTS MAJEURS 1/ Plateforme morphologique avec 2 microscopes électroniques 2/ Plateforme de morphologie confocale 3/ Plateforme IBISA de séquençage 4/ Plateforme de protéomique - MALDI-TOF 5/ Plateforme de transcriptome 6/ Plateforme bio-informatique 7/ Plateformes de surveillance sanitaire et démographique 8/ Laboratoire de niveau de sécurité 3 (LNSB3) 9/ Séquenceur de type 4.5.4



THESES de DOCTORAT ANNÉE 2014

CONTRATS ANNÉE 2014 Eric Chabrière

Etude préliminaire de Décontamination des Agents Neurotoxiques par Utilisation de BioEpurateurs

DGA 2014 AMU

Philippe Parola

REMEDIER AMIDEX 2014 AMU

BREVETS ANNÉE 2014 Use of an acellular empirical culture medium for the growth of intracellular bacteria

2014-12-03 Raoult Didier Kowalczewska Malgorzata Singh Sudhir Kumar

Fondation Méditerranée Infection

Sulfolobal phosphotriesterase-like (pll) lactonases activity having enhanced properties and the uses thereof

2014-10-16 Chabriere Eric Elias Mikael Hiblot Julien Raoult Didier

CNRS AMU

Use of an antioxidant compound for cultivating bacteria sensitive to oxygen tension

2014-05-01 Drancourt Michel La Scola Bernard Raoult Didier

Fond Mediterranee Infection

Nom Prénom Sujet Date thèse

GONZALEZ Daniel Les protéines DING et les "Nanons" 23/06/2014

IROUNGOU Berthe Syndrome fébrile non bactérien en milieu pédiatrique à Franceville au Gabon 15/09/2014

YSSOUF Amina Identification des Arthropodes vecteurs et des micro-organismes associés par MALDI-TOF MS 06/10/2014

KEITA Alpha Microbiote instestinal des gorilles : évaluation de la diversité bactérienne, détection des pathogène et description des nouvelles espèces

31/10/2014

ROULI Laetitia Etude systématique des génomes bactériens 31/10/2014

HUGON Perrine «Etablissement du répertoire humain des procaryotes et diversité du microbiote digestif par approches variées » 31/10/2014

DRALI Rezak Poux,Génotype,Classification,Evolution,Résistance aux insecticides,Différentiation 15/12/2014

PADMANABHAN Babu Roshan KA Mignane Biram 09/12/2014

KA Mignane Biram céllules immunes, fiévre Q, molecules de co-signalisation,PD-1,endocardite,IL-10 01/12/2014

KEITA Mamadou Boye Microbiote intestinal des Gorilles 31/10/2014 BENKOUITEN Samir Les infections respiratoires aiguës chez les pèlerins du Hajj 12/11/2014

PRASSAD ABNAVE Explorer l'immunité des mammifères contre les bactéries intracellulaires à partir des planaires 25/11/2014

ESETA Bersissa Recherche moléculaire des arthropodes et des bactéries VECTEUR DE L'ETHIOPIE 02/12/2014

HRAIECH Sami Evaluation de stratégies thérapeutiques dans des modèles murins de pneumonie 16/12/2014

SENGHOR Bruno Etude de la dynamique de transmission saisonnière de Schistosoma Haematobium dans les écosystèmes pluvio-temporaires de Niakhar

22/12/2014

SOBHY Haitham Characterization of proteins involved in the fibers of Mimivirus 26/09/2014



Method for the diagnosis of rosacea 2014-02-13 Aubert Jerome Murillo Nathalia Raoult Didier

Galderma Res & Dev CNRS AMU

Nucleic acid fragments and specific detection method by molecular identification of different bacteria species of the genus Acinetobacter

2014-02-06 La Scola Bernard Raoult Didier

AMU CNRS

Marker of pathogenicity in Salmonella 2014-01-09 de la Cruz Villegas Miguel Angel Meresse Stephane Gorvel Jean-Pierre Raoult Didier

INSERM CNRS AMU

PUBLICATIONS ANNÉE 2014 Abnave P, Mottola G, Gimenez G, Boucherit N, Trouplin V, Torre C, Conti F, Ben Amara A, Lepolard C, Djian B, Hamaoui D, Mettouchi A, Kumar A, Pagnotta S, Bonatti S, Lepidi H, Salvetti A, Abi-Rached L, Lemichez E, Mege JL, Ghigo E. Screening in planarians identifies MORN2 as a key component in LC3-associated phagocytosis and resistance to bacterial infection. Cell Host Microbe. 2014 Sep 10;16(3):338-50. Abrahão JS, Boratto P, Dornas FP, Silva LC, Campos RK, Almeida GM, Kroon EG, La Scola B. Growing a giant: evaluation of the virological parameters for mimivirus production. J Virol Methods. 2014 Oct;207:6-11 Aherfi S, Boughalmi M, Pagnier I, Fournous G, La Scola B, Raoult D, Colson P. Complete genome sequence of Tunisvirus, a new member of the proposed family Marseilleviridae. Arch Virol. 2014 Sep;159(9):2349-58. Aherfi S, La Scola B, Pagnier I, Raoult D, Colson P. The expanding family Marseilleviridae. Virology. 2014 Oct;466-467:27-37 Aherfi S, Solas C, Motte A, Moreau J, Borentain P, Mokhtari S, Botta-Fridlund D, Dhiver C, Portal I, Ruiz JM, Ravaux I, Bregigeon S, Poizot-Martin I, Stein A, Gérolami R, Brouqui P, Tamalet C, Colson P. Hepatitis C virus NS3 protease genotyping and drug concentration determination during triple therapy with telaprevir or boceprevir for chronic infection with genotype 1 viruses, southeastern France. J Med Virol. 2014 Nov;86(11):1868-76. Aherfi S, Borentain P, Raissouni F, Le Goffic A, Guisset M, Renou C, Grimaud JC, Hardwigsen J, Garcia S, Botta-Fridlund D, Nafati C, Motte A, Le Treut YP, Colson P, Gerolami R. Liver transplantation for acute liver failure related to autochthonous genotype 3 hepatitis E virus infection. Clin Res Hepatol Gastroenterol. 2014 Feb;38(1):24-31. Al Bayssari C, Diene SM, Loucif L, Gupta SK, Dabboussi F, Mallat H, Hamze M, Rolain JM. Emergence of VIM-2 and IMP-15 carbapenemases and inactivation of oprD gene in carbapenem-resistant Pseudomonas aeruginosa clinical isolates from Lebanon. Antimicrob Agents Chemother. 2014 Aug;58(8):4966-70. Alauzet F, Ambrosetti D, Geoffray A, Devred P, Dubus JC, Giovannini-Chami L. Fetal retained lung fluid: not always bilateral. J Pediatr. 2014 Jun;164(6):1498-1498.e1. Almelli T, Nuel G, Bischoff E, Aubouy A, Elati M, Wang CW, Dillies MA, Coppée JY, Ayissi GN, Basco LK, Rogier C, Ndam NT, Deloron P, Tahar R. Differences in gene transcriptomic pattern of Plasmodium falciparum in children with cerebral malaria and asymptomatic carriers. PLoS One. 2014 Dec 5;9(12):e114401. Ambrosi P, Kreitmann B, Habib G. Home blood pressure monitoring in heart transplant recipients: comparison with ambulatory blood pressure monitoring. Transplantation. 2014;97(3):363-7. Angelakis E, Mediannikov O, Socolovschi C, Mouffok N, Bassene H, Tall A, Niangaly H, Doumbo O, Znazen A, Sarih M, Sokhna C, Raoult D. Coxiella burnetii-positive PCR in febrile patients in rural and urban Africa. Int J Infect Dis. 2014 Nov;28:107-10. Angelakis E, Million M, Kankoe S, Lagier JC, Armougom F, Giorgi R, Raoult D. Abnormal weight gain and gut microbiota modifications are side effects of long-term doxycycline and hydroxychloroquine treatment. Antimicrob Agents Chemother. 2014 Jun;58(6):3342-7. Angelakis E, Raoult D. Pathogenicity and treatment of Bartonella infections. Int J Antimicrob Agents. 2014 Jul;44(1):16-25 Angelakis E, Yasir M, Azhar EI, Papadioti A, Bibi F, Aburizaiza AS, Metidji S, Memish ZA, Ashshi AM, Hassan AM, Harakeh S, Gautret P, Raoult D. MALDI-TOF mass spectrometry and identification of new bacteria species in air samples from Makkah, Saudi Arabia. BMC Res Notes. 2014 Dec 9;7:892. Angelakis E, Raoult D. Methods for the discovery of emerging pathogens. Microb Pathog. 2014 Dec;77:114-8.



Angelakis E, Edouard S, Lafranchi MA, Pham T, Lafforgue P, Raoult D. Emergence of Q fever arthritis in France. J Clin Microbiol. 2014 Apr;52(4):1064-7. Angelakis E, Azhar EI, Bibi F, Yasir M, Al-Ghamdi AK, Ashshi AM, Elshemi AG, Raoult D. Paper money and coins as potential vectors of transmissible disease. Future Microbiol. 2014;9(2):249-61. Angelakis E, Bibi F, Ramasamy D, Azhar EI, Jiman-Fatani AA, Aboushoushah SM, Lagier JC, Robert C, Caputo A, Yasir M, Fournier PE, Raoult D. Non-contiguous finished genome sequence and description of Clostridium saudii sp. nov. Stand Genomic Sci. 2014 Dec 8;9:8. Appelt S, Fancello L, Le Bailly M, Raoult D, Drancourt M, Desnues C. Viruses in a 14th-century coprolite. Appl Environ Microbiol. 2014 May;80(9):2648-55. Appelt S, Armougom F, Le Bailly M, Robert C, Drancourt M. Polyphasic analysis of a middle ages coprolite microbiota, Belgium. PLoS One. 2014 Feb 28;9(2):e88376. Assaidi A, Sumian M, Mauri L, Mancini J, Ovaert C, Salaun E, Habib G, Fraisse A. Transcatheter closure of complex atrial septal defects is efficient under intracardiac echocardiographic guidance. Arch Cardiovasc Dis. 2014 Dec;107(12):646-53. Bakour S, Touati A, Bachiri T, Sahli F, Tiouit D, Naim M, Azouaou M, Rolain JM. First report of 16S rRNA methylase ArmA-producing Acinetobacter baumannii and rapid spread of metallo-β-lactamase NDM-1 in Algerian hospitals. J Infect Chemother. 2014 Nov;20(11):696-701. Bataille S, Baralla C, Torro D, Buffat C, Berland Y, Alazia M, Loundou A, Michelet P, Vacher-Coponat H. Undercorrection of hypernatremia is frequent and associated with mortality. BMC Nephrol. 2014 Feb 21;15:37. Bechah Y, Verneau J, Ben Amara A, Barry AO, Lépolard C, Achard V, Panicot-Dubois L, Textoris J, Capo C, Ghigo E, Mege JL. Persistence of Coxiella burnetii, the agent of Q fever, in murine adipose tissue. PLoS One. 2014 May 16;9(5):e97503. Bechis C, Michel F, Merrot T, Nicoleta P, Lando A, Leone M, Martin C. [Comparison of two protocols of prophylactic antibiotic therapy in childhood appendectomy]. Arch Pediatr. 2014 Nov;21(11):1167-72. Belbel Z, Chettibi H, Dekhil M, Ladjama A, Nedjai S, Rolain JM. Outbreak of an armA methyltransferase-producing ST39 Klebsiella pneumoniae clone in a pediatric Algerian Hospital. Microb Drug Resist. 2014 Aug;20(4):310-5. Bellot B, Bonnet C, Retornaz K, Panuel M, Garnier JM, Dubus JC, Jurquet AL. [Nicolau syndrome after intramuscular injection]. Arch Pediatr. 2014 Apr;21(4):377-80. Benamar S, La Scola B, Croce O. Genome Sequence of Afipia felis Strain 76713, Isolated in Hospital Water Using an Amoeba Co-Culture Procedure. Genome Announc. 2014 Dec 24;2(6). Bendjama E, Loucif L, Diene SM, Michelle C, Gacemi-Kirane D, Rolain JM. Non-contiguous finished genome sequence and description of Paucisalibacillus algeriensis sp. nov. Stand Genomic Sci. 2014 Mar 18;9(3):1352-65 Bendjama E, Loucif L, Diene SM, Michelle C, Gacemi-Kirane D, Rolain JM. Non-contiguous finished genome sequence and description of Bacillus massilioalgeriensis sp. nov. Stand Genomic Sci. 2014 Mar 30;9(3):1046-61. Benkouiten S, Brouqui P, Gautret P. Non-pharmaceutical interventions for the prevention of respiratory tract infections during Hajj pilgrimage. Travel Med Infect Dis. 2014 Sep-Oct;12(5):429-42. Benkouiten S, Minodier P, Raoult D, Brouqui P. Obtaining informed consent in pediatric clinical trials. J Clin Epidemiol. 2014 Jul;67(7):840-1. Berrazeg M, Diene S, Medjahed L, Parola P, Drissi M, Raoult D, Rolain J. New Delhi Metallo-beta-lactamase around the world: an eReview using Google Maps. Euro Surveill. 2014 May 22;19(20). pii: 20809. Bisbal M, Jouve E, Papazian L, de Bourmont S, Perrin G, Eon B, Gainnier M. Effectiveness of SAPS III to predict hospital mortality for post-cardiac arrest patients. Resuscitation. 2014 Jul;85(7):939-44. Bittar F, Keita MB, Lagier JC, Peeters M, Delaporte E, Raoult D. Gorilla gorilla gorilla gut: a potential reservoir of pathogenic bacteria as revealed using culturomics and molecular tools. Sci Rep. 2014 Nov 24;4:7174. Blasco V, Antonini F, Zieleskiewicz L, Hammad E, Albanèse J, Martin C, Leone M. Comparative study of three methods of estimation of creatinine clearance in critically ill patients. Ann Fr Anesth Reanim. 2014 May;33(5):e85-8. Bonacci T, Audebert S, Camoin L, Baudelet E, Bidaut G, Garcia M, Witzel II, Perkins ND, Borg JP, Iovanna JL, Soubeyran P. Identification of new mechanisms of cellular response to chemotherapy by tracking changes in post-translational modifications by ubiquitin and ubiquitin-like proteins. J Proteome Res. 2014 May 2;13(5):2478-94.



Bonello B, Renard S, Mancini J, Hubert S, Habib G, Fraisse A. Life span of patients with Eisenmenger syndrome is not superior to that of patients with other causes of pulmonary hypertension. Cardiovasc Diagn Ther. 2014 Oct;4(5):341-9. Boratto P, Albarnaz JD, Almeida GM, Botelho L, Fontes AC, Costa AO, Santos Dde A, Bonjardim CA, La Scola B, Kroon EG, Abrahão JS. Acanthamoeba polyphaga mimivirus prevents amoebal encystment-mediating serine proteinase expression and circumvents cell encystment. J Virol. 2015 Mar;89(5):2962-5 Borentain P, Colson P, Dhiver C, Gregoire E, Hardwigsen J, Botta-Fridlund D, Garcia S, Gerolami R. Successful treatment with sofosbuvir of fibrosing cholestatic hepatitis C after liver transplantation in an HIV-HCV-coinfected patient. Antivir Ther. 2015;20(3):353-6. Bouricha M, Castan B, Duchene-Parisi E, Drancourt M. Mycobacterium marinum infection following contact with reptiles: vivarium granuloma. Int J Infect Dis. 2014 Apr;21:17-8. Boutellis A, Abi-Rached L, Raoult D. The origin and distribution of human lice in the world. Infect Genet Evol. 2014 Apr;23:209-17. Bretelle F, Shojai R, Brunet J, Tardieu S, Manca MC, Durant J, Ricciardi C, Boubli L, Leonetti G. Medical students as sexual health peer educators: who benefits more? BMC Med Educ. 2014 Aug 7;14:162. Brouqui P, Ippolito G. Ebola and travel--management of imported cases. Travel Med Infect Dis. 2014 Nov-Dec;12(6 Pt A):561-2. Brouqui P, Jouve E, Romain F, Sambuc R, Raoult D. Are infectious disease doctors better at caring for infectious diseases than other specialists? Clin Infect Dis. 2014 May;58(10):1486-7. Brégeon F, Brioude G, De Dominicis F, Atieh T, D'Journo XB, Flaudrops C, Rolain JM, Raoult D, Thomas PA. MALDI-ToF mass spectrometry for the rapid diagnosis of cancerous lung nodules. PLoS One. 2014 May 15;9(5):e97511 Bylicki O, Vandemoortele T, Orsini B, Laroumagne S, D'Journo XB, Astoul P, Thomas PA, Dutau H. Incidence and management of anastomotic complications after bronchial resection: a retrospective study. Ann Thorac Surg. 2014 Dec;98(6):1961-7. Bzdrenga J, Hiblot J, Gotthard G, Champion C, Elias M, Chabriere E. SacPox from the thermoacidophilic crenarchaeon Sulfolobus acidocaldarius is a proficient lactonase. BMC Res Notes. 2014 Jun 3;7:333. Carcopino X, Barde K, Petrovic M, Beucher G, Capmas P, Huchon C, Deffieux X, d'Ercole C, Bretelle F. [Threatened late miscarriage. French guidelines.]. JGynecol Obstet Biol Reprod (Paris). 2014 Nov 6;43(10):842-855 Cassir N, Hraiech S, Nougairede A, Zandotti C, Fournier PE, Papazian L. Outbreak of adenovirus type 1 severe pneumonia in a French intensive care unit, September-October 2012. Euro Surveill. 2014 Oct 2;19(39). pii: 20914. Cassir N, Croce O, Pagnier I, Benamar S, Couderc C, Robert C, Raoult D, La Scola B. Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium. Stand Genomic Sci. 2014 Apr 4;9(3):794-806. Cassir N, Rolain JM, Brouqui P. A new strategy to fight antimicrobial resistance: the revival of old antibiotics. Front Microbiol. 2014 Oct 20;5:551. Chabrière E, Gonzalez D, Azza S, Durand P, Shiekh FA, Moal V, Baudoin JP, Pagnier I, Raoult D. Fetuin is the key for nanon self-propagation. Microb Pathog. 2014 Aug;73:25-30. Chesné J, Danger R, Botturi K, Reynaud-Gaubert M, Mussot S, Stern M, Danner-Boucher I, Mornex JF, Pison C, Dromer C, Kessler R, Dahan M, Brugière O, Le Pavec J, Perros F, Humbert M, Gomez C, Brouard S, Magnan A; COLT Consortium. Systematic analysis of blood cell transcriptome in end-stage chronic respiratory diseases. PLoS One. 2014 Oct 20;9(10):e109291. Chiche L, Jourde-Chiche N, Whalen E, Presnell S, Gersuk V, Dang K, Anguiano E, Quinn C, Burtey S, Berland Y, Kaplanski G, Harle JR, Pascual V, Chaussabel D. Modular transcriptional repertoire analyses of adults with systemic lupus erythematosus reveal distinct type I and type II interferon signatures. Arthritis Rheumatol. 2014 Jun;66(6):1583-95. Chisu V, Masala G, Foxi C, Socolovschi C, Raoult D, Parola P. Rickettsia conorii israelensis in Rhipicephalus sanguineus ticks, Sardinia, Italy. Ticks Tick Borne Dis. 2014 Jun;5(4):446-8. Colson P, Ravaux I, Tourrès C, Stein A, Tamalet C. Detection of the newly characterized HIV CRF56_cpx in Marseille, southeastern France. Int J Infect Dis. 2014 Dec;29:241-3



Colson P, Ravaux I, Tamalet C, Glazunova O, Baptiste E, Chabriere E, Wiedemann A, Lacabaratz C, Chefrour M, Picard C, Stein A, Levy Y, Raoult D. HIV infection en route to endogenization: two cases. Clin Microbiol Infect. 2014 Dec;20(12):1280-8 Conti F, Abnave P, Ghigo E. Unconventional animal models: a booster for new advances in host-pathogen interactions. Front Cell Infect Microbiol. 2014 Oct 8;4:142. Croce O, Robert C, Raoult D, Drancourt M. Draft Genome Sequence of Mycobacterium vulneris DSM 45247T. Genome Announc. 2014 May 8;2(3). pii: e00370-14. Croce O, Robert C, Raoult D, Drancourt M. Draft Genome Sequence of Mycobacterium farcinogenes NCTC 10955. Genome Announc. 2014 May 29;2(3). pii:e00523-14. Croce O, Robert C, Raoult D, Drancourt M. Draft Genome Sequence of Mycobacterium mageritense DSM 44476T. Genome Announc. 2014 May 1;2(2). pii:e00354-14. Croce O, Hugon P, Lagier JC, Bibi F, Robert C, Azhar EI, Raoult D, Fournier PE. Genome Sequence of Bacillus simplex Strain P558, Isolated from a Human Fecal Sample. Genome Announc. 2014 Dec 11;2(6). pii: e01241-14. Croce O, Robert C, Raoult D, Drancourt M. Draft Genome Sequence of Mycobacterium asiaticum Strain DSM 44297. Genome Announc. 2014 Apr 17;2(2). pii: e00320-14. Croce O, Robert C, Raoult D, Drancourt M. Draft Genome Sequence of Mycobacterium austroafricanum DSM 44191. Genome Announc. 2014 Apr 17;2(2). pii: e00317-14. Croce O, Robert C, Raoult D, Drancourt M. Draft Genome Sequence of Mycobacterium cosmeticum DSM 44829. Genome Announc. 2014 Apr 10;2(2). pii:e00315-14. D'Amato F, Robert C, Azhar EI, Fournier PE, Raoult D. Draft Genome Sequence of Coxiella burnetii Strain Cb196, an Agent of Endocarditis in Saudi Arabia. Genome Announc. 2014 Nov 26;2(6). pii: e01180-14. D'amato F, Million M, Edouard S, Delerce J, Robert C, Marrie T, Raoult D. Draft genome sequence of Coxiella burnetii Dog Utad, a strain isolated from a dog-related outbreak of Q fever. New Microbes New Infect. 2014 Jul;2(4):136-7. D'Amato F, Rouli L, Edouard S, Tyczka J, Million M, Robert C, Nguyen TT, Raoult D. The genome of Coxiella burnetii Z3055, a clone linked to the Netherlands Q fever outbreaks, provides evidence for the role of drift in the emergence of epidemic clones. Comp Immunol Microbiol Infect Dis. 2014 Dec;37(5-6):281-8. D'Journo XB, Thomas PA. Current management of esophageal cancer. J Thorac Dis. 2014 May;6 Suppl 2:S253-64. Daou P, Hasan S, Breitsprecher D, Baudelet E, Camoin L, Audebert S, Goode BL, Badache A. Essential and nonredundant roles for Diaphanous formins in cortical microtubule capture and directed cell migration. Mol Biol Cell. 2014 Mar;25(5):658-68. De la Cruz MA, Zhao W, Farenc C, Gimenez G, Raoult D, Cambillau C, Gorvel JP, Méresse S. A toxin-antitoxin module of Salmonella promotes virulence in mice. PLoS Pathog. 2013;9(12):e1003827 de Laval F, Savini H, Biance-Valero E, Simon F. Human schistosomiasis: an emerging threat for Europe. Lancet. 2014 Sep 20;384(9948):1094-5. Delabre S, Parola P, Thiberville D, Brouqui P, Delmont J, Gautret P. Non-ophthalmological presentation of imported loiasis. Travel Med Infect Dis. 2014 Jul-Aug;12(4):406-9. Delord M, Socolovschi C, Parola P. Rickettsioses and Q fever in travelers (2004-2013). Travel Med Infect Dis. 2014 Sep-Oct;12(5):443-58 Desnues C, Raoult D. Reply to Sauvage et al. J Infect Dis. 2014 Dec 15;210(12):2018-9. Despierres L, Beziane A, Kaplanski G, Granel B, Serratrice J, Cohen W, Bretelle F, Rossi P, Morange PE, Weiller PJ, Robert Harlé J, Bongrand P, Bardin N. Contribution of anti-β2glycoprotein I IgA antibodies to the diagnosis of anti-phospholipid syndrome: potential interest of target domains to discriminate thrombotic and non-thrombotic patients. Rheumatology (Oxford). 2014 Jul;53(7):1215-8. Diatta G, Mediannikov O, Sokhna C, Bassene H, Socolovschi C, Ratmanov P, Fenollar F, Raoult D. Prevalence of Bartonella quintana in patients with fever and head lice from rural areas of Sine-Saloum, Senegal. Am J Trop Med Hyg. 2014 Aug;91(2):291-3. Dieme C, Yssouf A, Vega-Rúa A, Berenger JM, Failloux AB, Raoult D, Parola P, Almeras L. Accurate identification of Culicidae at aquatic developmental stages by MALDI-TOF MS profiling. Parasit Vectors. 2014 Dec 2;7:544.



Diene SM, Rolain JM. Carbapenemase genes and genetic platforms in Gram-negative bacilli: Enterobacteriaceae, Pseudomonas and Acinetobacter species. Clin Microbiol Infect. 2014 Sep;20(9):831-8. Diene SM, Fenollar F, Fall B, Sow K, Niang B, Samba Ba P, Wade B, Raoult D, Rolain JM. CTX-M-15-producing Morganella morganii from Hôpital Principal de Dakar, Senegal. New Microbes New Infect. 2014 Mar;2(2):46-9. Dornas FP, Silva LC, de Almeida GM, Campos RK, Boratto PV, Franco-Luiz AP, La Scola B, Ferreira PC, Kroon EG, Abrahão JS. Acanthamoeba polyphaga mimivirus stability in environmental and clinical substrates: implications for virus detection and isolation. PLoS One. 2014 Feb 3;9(2):e87811. Doudier B, Vencatassin H, Aherfi S, Colson P. Fatal fulminant hepatitis E associated with autoimmune hepatitis and excessive paracetamol intake in Southeastern France. J Clin Microbiol. 2014 Apr;52(4):1294-7. Drancourt M, Prebet T, Aghnatios R, Edouard S, Cayrou C, Henry M, Blaise D, Raoult D. Planctomycetes DNA in febrile aplastic patients with leukemia, rash, diarrhea, and micronodular pneumonia. J Clin Microbiol. 2014 Sep;52(9):3453-5. Drancourt M, Raoult D. Yersinia pestis and the three plague pandemics. Lancet Infect Dis. 2014 Oct;14(10):918-9. Drancourt M. Microbe discovery: lessons from the past. Clin Microbiol Infect. 2014;20(3):189-90. Drancourt M. Looking in amoebae as a source of mycobacteria. Microb Pathog. 2014;77:119-24. Drancourt M. Multiplex testing of diarrhoea breaks down microbial barriers. Lancet Infect Dis. 2014 Aug;14(8):663-4. Drissi F, Merhej V, Angelakis E, El Kaoutari A, Carrière F, Henrissat B, Raoult D. Comparative genomics analysis of Lactobacillus species associated with weight gain or weight protection. Nutr Diabetes. 2014 Feb 24;4:e109. Dubourg G, Abat C, Rolain JM, Raoult D. Correlation between sputum and bronchoalveolar lavage fluid cultures. J Clin Microbiol. 2015 Mar;53(3):994-6. Dubourg G, Lagier JC, Robert C, Armougom F, Hugon P, Metidji S, Dione N, Dangui NP, Pfleiderer A, Abrahao J, Musso D, Papazian L, Brouqui P, Bibi F, Yasir M, Vialettes B, Raoult D. Culturomics and pyrosequencing evidence of the reduction in gut microbiota diversity in patients with broad-spectrum antibiotics. Int J Antimicrob Agents. 2014 Aug;44(2):117-24. Dubourg G, Colson P, Tamalet C, Fournier PE, Raoult D. Increase in sexually transmitted infections during Europride 2013 in Marseille, France. Lancet Infect Dis. 2014 Aug;14(8):677-8. Dubourg G, Socolovschi C, Del Giudice P, Fournier PE, Raoult D. Scalp eschar and neck lymphadenopathy after tick bite: an emerging syndrome with multiple causes. Eur J Clin Microbiol Infect Dis. 2014 Aug;33(8):1449-56. Dubus JC, Bassinet L, Chedevergne F, Delaisi B, Desmazes-Dufeu N, Reychler G, Vecellio L; GRAM (Groupe aérosols et mucoviscidose de la Société française de mucoviscidose). [Inhaled treatments in cystic fibrosis: what's new in 2013?]. RevMal Respir. 2014 Apr;31(4):336-46. Dupouey J, Faucher B, Edouard S, Richet H, de Broucker CA, Marié JL, Kodjo A, Davoust B. Epidemiological investigation of a human leptospirosis case reported in a suburban area near Marseille. New Microbes New Infect. 2014 May;2(3):82-3. Dupouey J, Faucher B, Edouard S, Richet H, Kodjo A, Drancourt M, Davoust B. Human leptospirosis: an emerging risk in Europe? Comp Immunol Microbiol Infect Dis. 2014 Mar;37(2):77-83. Edouard S, Mahamat A, Demar M, Abboud P, Djossou F, Raoult D. Comparison between emerging Q fever in French Guiana and endemic Q fever in Marseille, France. Am J Trop Med Hyg. 2014 May;90(5):915-9. Edouard S, Bibi F, Dhamodharan R, Lagier JC, Azhar EI, Robert C, Caputo A, Yasir M, Jiman-Fatani AA, Alawi M, Fournier PE, Raoult D. Non-contiguous finished genome sequence and description of Corynebacterium jeddahense sp. nov. Stand Genomic Sci. 2014 Apr 29;9(3):987-1002. Edouard S, Sankar S, Dangui NP, Lagier JC, Michelle C, Raoult D, Fournier PE. Genome sequence and description of Nesterenkonia massiliensis sp. nov. strain NP1(T.). Stand Genomic Sci. 2014 Apr 1;9(3):866-82. Edouard S, Michel-Lepage A, Raoult D. Does it make sense to detect Streptococcus pyogenes during tonsillitis in Europe to prevent acute rheumatic fever? Clin Microbiol Infect. 2014 Dec;20(12):O981-2. Ehehalt U, Schunk M, Jensenius M, van Genderen PJ, Gkrania-Klotsas E, Chappuis F, Schlagenhauf P, Castelli F, Lopez-Velez R, Parola P, Burchard GD, Cramer JP. Leishmaniasis acquired by travellers to endemic regions in Europe: a EuroTravNet multi-centre study. Travel Med Infect Dis. 2014 Mar-Apr;12(2):167-72.



El Houmami N, Dubourg G, Minodier P, Verschuur A, Bouvier C, Jouve JL, Raoult D, Fournier PE. Kingella kingae DNA in langerhans cell histiocytosis of bone. Pediatr Infect Dis J. 2015 Mar;34(3):317-8 El Kaoutari A, Armougom F, Raoult D, Henrissat B. [Gut microbiota and digestion of polysaccharides]. Med Sci (Paris). 2014 Mar;30(3):259-65. Elbir H, Abi-Rached L, Pontarotti P, Yoosuf N, Drancourt M. African relapsing Fever borreliae genomospecies revealed by comparative genomics. Front Public Health. 2014 May 14;2:43. Eldin C, Mahamat A, Demar M, Abboud P, Djossou F, Raoult D. Q fever in French Guiana. Am J Trop Med Hyg. 2014 Oct;91(4):771-6 Falcoz PE, Puyraveau M, Rivera C, Bernard A, Massard G, Mauny F, Dahan M, Thomas PA; Epithor Group. The impact of hospital and surgeon volume on the 30-day mortality of lung cancer surgery: A nation-based reappraisal. J Thorac Cardiovasc Surg. 2014 Sep;148(3):841-8. Fancello L, Monteil S, Popgeorgiev N, Rivet R, Gouriet F, Fournier PE, Raoult D, Desnues C. Viral communities associated with human pericardial fluids in idiopathic pericarditis. PLoS One. 2014 Apr 1;9(4):e93367. Fenollar F, Lagier JC, Raoult D. Tropheryma whipplei and Whipple's disease. J Infect. 2014 Aug;69(2):103-12. Fenollar F, Perreal C, Raoult D. Tropheryma whipplei natural resistance to trimethoprim and sulphonamides in vitro. Int J Antimicrob Agents. 2014 Apr;43(4):388-90. Fotso Fotso A, Mediannikov O, Padmanabhan R, Robert C, Fournier PE, Raoult D, Drancourt M. Genome Sequence of Borrelia crocidurae Strain 03-02, a Clinical Isolate from Senegal. Genome Announc. 2014 Nov 6;2(6). pii: e01150-14. Fotso Fotso A, Mediannikov O, Diatta G, Almeras L, Flaudrops C, Parola P, Drancourt M. MALDI-TOF mass spectrometry detection of pathogens in vectors: the Borrelia crocidurae/Ornithodoros sonrai paradigm. PLoS Negl Trop Dis. 2014 Jul 24;8(7):e2984. Fournier PE, Levy PY, Million M, Croce O, Blanc-Tailleur C, Brouqui P, Raoult D. Genome of a chronic osteitis-causing Clostridium tetani. New Microbes New Infect. 2014 Jan;2(1):25-6. Fraisier C, Papa A, Granjeaud S, Hintzen R, Martina B, Camoin L, Almeras L. Cerebrospinal fluid biomarker candidates associated with human WNV neuroinvasive disease. PLoS One. 2014 Apr 2;9(4):e93637. Fraisier C, Koraka P, Belghazi M, Bakli M, Granjeaud S, Pophillat M, Lim SM, Osterhaus A, Martina B, Camoin L, Almeras L. Kinetic analysis of mouse brain proteome alterations following Chikungunya virus infection before and after appearance of clinical symptoms. PLoS One. 2014 Mar 11;9(3):e91397. Fritz S, Cassir N, Noudel R, De La Rosa S, Roche PH, Drancourt M. Postsurgical Pantoea calida meningitis: a case report. J Med Case Rep. 2014 Jun 16;8:195. Gachelin E, Martinez S, David M, Colavolpe N, Gaubert JY, Dubus JC. [Systemic pulmonary anastomosis: a rare cause of massive hemoptysis]. Arch Pediatr. 2014 May;21(5):493-6. Gaia M, Benamar S, Boughalmi M, Pagnier I, Croce O, Colson P, Raoult D, La Scola B. Zamilon, a novel virophage with Mimiviridae host specificity. PLoS One. 2014 Apr 18;9(4):e94923. Galderisi M, Lancellotti P, Donal E, Cardim N, Edvardsen T, Habib G, Magne J, Maurer G, Popescu BA. European multicentre validation study of the accuracy of E/e' ratio in estimating invasive left ventricular filling pressure: EURO-FILLING study. Eur Heart J Cardiovasc Imaging. 2014 Jul;15(7):810-6. Gautret P, Benkouiten S, Parola P, Brouqui P, Memish Z, Raoult D. Occurrence of Tropheryma whipplei during diarrhea in Hajj pilgrims: a PCR analysis of paired rectal swabs. Travel Med Infect Dis. 2014 Sep-Oct;12(5):481-4. Gautret P, Lagier JC, Benkouiten S, Fenollar F, Raoult D, Brouqui P. Does Tropheryma whipplei contribute to travelers' diarrhea?: A PCR analysis of paired stool samples in French travelers to Senegal. Travel Med Infect Dis. 2014 May-Jun;12(3):264-7. Gautret P, Blanton J, Dacheux L, Ribadeau-Dumas F, Brouqui P, Parola P, Esposito DH, Bourhy H. Rabies in nonhuman primates and potential for transmission to humans: a literature review and examination of selected French national data. PLoS Negl Trop Dis. 2014 May 15;8(5):e2863. Gautret P, Parola P. Rabies in travelers. Curr Infect Dis Rep. 2014 Mar;16(3):394. Gautret P, Carrara P, Parola P. Long incubation in imported human rabies. Ann Neurol. 2014 Feb;75(2):324-5.



Ghodbane R, Mba Medie F, Lepidi H, Nappez C, Drancourt M. Long-term survival of tuberculosis complex mycobacteria in soil. Microbiology. 2014 Mar;160(Pt3):496-501. Ghodbane R, Raoult D, Drancourt M. Dramatic reduction of culture time of Mycobacterium tuberculosis. Sci Rep. 2014 Feb 28;4:4236. Gonzalez D, Richez M, Bergonzi C, Chabriere E, Elias M. Crystal structure of the phosphate-binding protein (PBP-1) of an ABC-type phosphate transporter from Clostridium perfringens. Sci Rep. 2014 Oct 16;4:6636. Gonzalez D, Elias M, Chabrière E. The DING family of phosphate binding proteins in inflammatory diseases. Adv Exp Med Biol. 2014;824:27-32. Gonzalez D, Hiblot J, Darbinian N, Miller JC, Gotthard G, Amini S, Chabriere E, Elias M. Ancestral mutations as a tool for solubilizing proteins: The case of a hydrophobic phosphate-binding protein. FEBS Open Bio. 2014 Jan 3;4:121-7. Gorincour G, Chaumoitre K, Bourliere-Najean B, Bretelle F, Sigaudy S, D'Ercole C, Philip N, Potier A, Petit P, Panuel M. Fetal skeletal computed tomography: when? How? Why? Diagn Interv Imaging. 2014 Nov;95(11):1045-53. Gorvel L, Textoris J, Banchereau R, Ben Amara A, Tantibhedhyangkul W, von Bargen K, Ka MB, Capo C, Ghigo E, Gorvel JP, Mege JL. Intracellular bacteria interfere with dendritic cell functions: role of the type I interferon pathway.PLoS One. 2014 Jun 10;9(6):e99420. Gouba N, Raoult D, Drancourt M. Gut microeukaryotes during anorexia nervosa: a case report. BMC Res Notes. 2014 Jan 13;7:33. Gouba N, Raoult D, Drancourt M. Eukaryote culturomics of the gut reveals new species. PLoS One. 2014 Sep 11;9(9):e106994. Gregoire E, Brige P, Barbier L, Buffat C, Coppola A, Hardwigsen J, Le Treut YP, Vidal V, Rolland PH. Minimal portal vein stenosis is a promising preconditioning in living donor liver transplantation in porcine model. J Hepatol. 2014 Jul;61(1):59-66. Grob A, Thuny F, Villacampa C, Flavian A, Gaubert JY, Raoult D, Casalta JP, Habib G, Moulin G, Jacquier A. Cardiac multidetector computed tomography in infective endocarditis: a pictorial essay. Insights Imaging. 2014 Oct;5(5):559-70. Guervilly C, Dizier S, Thomas G, Jaussaud N, Morera P, Hraiech S, Klazen F, Forel JM, Adda M, Roch A, Collart F, Papazian L. Comparison of femorofemoral and femorojugular configurations during venovenous extracorporeal membrane oxygenation for severe ARDS. Intensive Care Med. 2014 Oct;40(10):1598-9. Gupta SK, Rolain JM. Reply to "Comparison of the web tools ARG-ANNOT and ResFinder for detection of resistance genes in bacteria". Antimicrob Agents Chemother. 2014 Aug;58(8):4987. Haddad PM, Fleischhacker WW, Peuskens J, Cavallaro R, Lean ME, Morozova M, Reynolds G, Azorin JM, Thomas P, Möller HJ. SMARTS (Systematic Monitoring of Adverse events Related to TreatmentS): The development of a pragmatic patient-completed checklist to assess antipsychotic drug side effects. Ther Adv Psychopharmacol. 2014 Feb;4(1):15-21. Hai VV, Almeras L, Socolovschi C, Raoult D, Parola P, Pagès F. Monitoring human tick-borne disease risk and tick bite exposure in Europe: available tools and promising future methods. Ticks Tick Borne Dis. 2014 Oct;5(6):607-19. Hamad I, Keita MB, Peeters M, Delaporte E, Raoult D, Bittar F. Pathogenic eukaryotes in gut microbiota of western lowland gorillas as revealed by molecular survey. Sci Rep. 2014 Sep 18;4:6417. Hamad I, Delaporte E, Raoult D, Bittar F. Detection of termites and other insects consumed by African great apes using molecular fecal analysis. Sci Rep. 2014 Mar 27;4:4478. Hassani II, Robert C, Michelle C, Raoult D, Hacène H, Desnues C. Non-contiguous finished genome sequence and description of Halopiger djelfamassiliensis sp. nov. Stand Genomic Sci. 2013 Oct 5;9(1):160-74. Haumonte JB, Caillat-Zucman S, Bretelle F, Lambert M, Lyonnet L, Levy-Mozziconacci A, Farnarier C, Aubert A, Boubli L, Camoin-Jau L, Dignat George F, Paul P. Enhanced prevalence of plasmatic soluble MHC class I chain-related molecule in vascular pregnancy diseases. Biomed Res Int. 2014;2014:653161. Helleringer S, Pison G, Masquelier B, Kanté AM, Douillot L, Duthé G, Sokhna C, Delaunay V. Improving the quality of adult mortality data collected in demographic surveys: validation study of a new siblings' survival questionnaire in Niakhar, Senegal. PLoS Med. 2014 May 27;11(5):e1001652. Hraiech S, Dizier S, Papazian L. The use of paralytics in patients with acute respiratory distress syndrome. Clin Chest Med. 2014 Dec;35(4):753-63.



Hraiech S, Hiblot J, Lafleur J, Lepidi H, Papazian L, Rolain JM, Raoult D, Elias M, Silby MW, Bzdrenga J, Bregeon F, Chabriere E. Inhaled lactonase reduces Pseudomonas aeruginosa quorum sensing and mortality in rat pneumonia. PLoS One. 2014 Oct 28;9(10):e107125. Ibrahim N, Ibrahim H, Dormoi J, Briolant S, Pradines B, Moreno A, Mazier D, Legrand P, Nepveu F. Albumin-bound nanoparticles of practically water-insoluble antimalarial lead greatly enhance its efficacy. Int J Pharm. 2014 Apr 10;464(1-2):214-24. Jachiet PA, Colson P, Lopez P, Bapteste E. Extensive gene remodeling in the viral world: new evidence for nongradual evolution in the mobilome network. Genome Biol Evol. 2014 Aug 7;6(9):2195-205. Jacquier A, Kallifatidis A, Guibert N, Giorgi R, Falque C, Thuny F, Croisille P, Clarysse P, Maurel B, Flavian A, Gaubert JY, Moulin G, Habib G. Assessment of myocardial partition coefficient of gadolinium (λ) in dilated cardiomyopathy and its impact on segmental and global systolic function. J Magn Reson Imaging. 2014 Dec;40(6):1336-41. Javelle E, Tiong TH, Leparc-Goffart I, Savini H, Simon F. Inflammation of the external ear in acute chikungunya infection: Experience from the outbreak in Johor Bahru, Malaysia, 2008. J Clin Virol. 2014 Apr;59(4):270-3. Jeantieu M, Gaillat F, Antonini F, Azoulay E, Martin C, Thomas P, Leone M. Postoperative pain and subsequent PTSD-related symptoms in patients undergoing lung resection for suspected cancer. J Thorac Oncol. 2014 Mar;9(3):362-9 Ka MB, Daumas A, Textoris J, Mege JL. Phenotypic diversity and emerging new tools to study macrophage activation in bacterial infectious diseases. Front Immunol. 2014 Oct 10;5:500. Ka MB, Gondois-Rey F, Capo C, Textoris J, Million M, Raoult D, Olive D, Mege JL. Imbalance of circulating monocyte subsets and PD-1 dysregulation in Q fever endocarditis: the role of IL-10 in PD-1 modulation. PLoS One. 2014 Sep 11;9(9):e107533. Keita MB, Padhmananabhan R, Caputo A, Robert C, Delaporte E, Raoult D, Fournier PE, Bittar F. Non-contiguous finished genome sequence and description of Paenibacillus gorillae sp. nov. Stand Genomic Sci. 2014 Mar 15;9(3):1031-45. Keita MB, Padhmanabhan R, Caputo A, Robert C, Delaporte E, Raoult D, Fournier PE, Bittar F. Non-contiguous finished genome sequence and description of Gorillibacterium massiliense gen. nov, sp. nov., a new member of the family Paenibacillaceae. Stand Genomic Sci. 2014 Mar 15;9(3):807-20. Keita MB, Hamad I, Bittar F. Looking in apes as a source of human pathogens. Microb Pathog. 2014 Dec;77:149-54. Kernif T, Leulmi H, Socolovschi C, Berenger JM, Lepidi H, Bitam I, Rolain JM, Raoult D, Parola P. Acquisition and excretion of Bartonella quintana by the cat flea, Ctenocephalides felis felis. Mol Ecol. 2014 Mar;23(5):1204-12. Khelaifia S, Garibal M, Robert C, Raoult D, Drancourt M. Draft Genome Sequence of a Human-Associated Isolate of Methanobrevibacter arboriphilicus, the Lowest-G+C-Content Archaeon. Genome Announc. 2014 Jan 23;2(1). Khelaifia S, Garibal M, Robert C, Raoult D, Drancourt M. Draft Genome Sequencing of Methanobrevibacter oralis Strain JMR01, Isolated from the Human Intestinal Microbiota. Genome Announc. 2014 Feb 20;2(1). Kumar K, Pradines B, Madamet M, Amalvict R, Kumar V. 1H-1,2,3-triazole tethered mono- and bis-ferrocenylchalcone-β-lactam conjugates: synthesis and antimalarial evaluation. Eur J Med Chem. 2014 Oct 30;86:113-21. Kumar K, Pradines B, Madamet M, Amalvict R, Benoit N, Kumar V. 1H-1,2,3-triazole tethered isatin-ferrocene conjugates: Synthesis and in vitro antimalarial evaluation. Eur J Med Chem. 2014 Nov 24;87:801-4. Kumsa B, Parola P, Raoult D, Socolovschi C. Molecular detection of Rickettsia felis and Bartonella henselae in dog and cat fleas in Central Oromia, Ethiopia. Am J Trop Med Hyg. 2014 Mar;90(3):457-62 La Scola B, Khelaifia S, Lagier JC, Raoult D. Aerobic culture of anaerobic bacteria using antioxidants: a preliminary report. Eur J Clin Microbiol Infect Dis. 2014 Oct;33(10):1781-3. La Scola B. Looking at protists as a source of pathogenic viruses. Microb Pathog. 2014 Dec;77:131-5. Lagarde S, Lagier JC, Charrel R, Quérat G, Vanhomwegen J, Desprès P, Pelletier J, Kaphan E. Japanese encephalitis in a French traveler to Nepal. J Neurovirol. 2014 Feb;20(1):99-102. Lagier JC, Fenollar F, Raoult D. Whipple's disease: surprised by the surprise. Lancet. 2014 Sep 27;384(9949):1184-5.



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UNITES DE RECHERCHE - medecine.univ-amu.fr · MEDIANNIKOV Oleg CR IRD Dakar Sénégal/Marseille MEGE Jean-Louis PU-PH MERHEJ Vicky MCF MILITELLO Muriel TCH AMU CDD MILLION Matthieu